View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11872_high_5 (Length: 435)
Name: NF11872_high_5
Description: NF11872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11872_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 345; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 30 - 413
Target Start/End: Original strand, 9333203 - 9333589
Alignment:
| Q |
30 |
tctaacttattatagcttttctcaataataggaaaatgttactggattaagtattggggaagattcattttataaaggagaagaattcatggtaaaagaa |
129 |
Q |
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| T |
9333203 |
tctaacttattatagcttttctcaataataggaaaatgttactggattaagtattggggaagattcatttgataaaggagaagaattcatggtaaaagaa |
9333302 |
T |
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| Q |
130 |
aggatgaatttggaaatagaagactatccagggacaggtgcaaacaaccaccatgaccccaatccaccaggaagagtttgagctatgaatatatttatta |
229 |
Q |
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| T |
9333303 |
aggatgaatttggaaatagaagactatccagggacaggtgcaaacaaccaccatgaccccaatccaccaggaagagtttgagctatgaatacatttatta |
9333402 |
T |
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| Q |
230 |
agatttattagaaaattattattagtttgtatgtaaattgtagtagcatacttatatatttttggtgttatagtatgttttcatccactattttctaatg |
329 |
Q |
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| T |
9333403 |
agatttattagaaaattattattagtttgtatgtaaatt---gtagcatacttatatatttttggtgttatagtatgttttcatccactattttctaatg |
9333499 |
T |
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| Q |
330 |
gatg------atatatgtttgtatgtaaattgtagcagattattgtagctaaagataaaagttttatttgttcattatttctatgatgat |
413 |
Q |
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| T |
9333500 |
gatgatatatatatatgtttgtatgtaaattgtagcagattattgtagctaaagataaaagttttatttgttcattatttctatgatgat |
9333589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 30 - 249
Target Start/End: Original strand, 9335000 - 9335219
Alignment:
| Q |
30 |
tctaacttattatagcttttctcaataataggaaaatgttactggattaagtattggggaagattcattttataaaggagaagaattcatggtaaaagaa |
129 |
Q |
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| T |
9335000 |
tctaacataatatagcttttgtcaataataggaaagtgttattggatttagtaatggagaagatttgttggataaaagagaagagttcttggtaaagaaa |
9335099 |
T |
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| Q |
130 |
aggatgaatttggaaatagaagactatccagggacaggtgcaaacaaccaccatgaccccaatccaccaggaagagtttgagctatgaatatatttatta |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || || ||||||||||||||||| ||| ||| || ||| |
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| T |
9335100 |
aggatgaatttggaaatagaagactatccagggacaggagcaaacaaccaccatgatcctaaggtaccaggaagagtttgagtgatgcataatttcttta |
9335199 |
T |
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| Q |
230 |
agatttattagaaaattatt |
249 |
Q |
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| T |
9335200 |
tgatttattagaaaattatt |
9335219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 277 - 357
Target Start/End: Original strand, 9335242 - 9335321
Alignment:
| Q |
277 |
atacttatatatttttggtgttatagtatgttttcatccactattttctaatggatgatatatgtttgtatgtaaattgta |
357 |
Q |
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| T |
9335242 |
atacttgtacattattggtgttatagtatgttttcatcaac-atattttaatgggtgatattagtttgtatgtagattgta |
9335321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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