View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11872_high_7 (Length: 384)
Name: NF11872_high_7
Description: NF11872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11872_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 84 - 356
Target Start/End: Original strand, 28783194 - 28783466
Alignment:
| Q |
84 |
gaacctgtggaggtttgtatactggaacaggtggtaaaactggatgttcaacctttggtggtggacatggtttcttgaccggaaccggtggtggttgtgg |
183 |
Q |
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| T |
28783194 |
gaaccggtggaggtttgtatactggaacaggtggtaaaactggatgttcaacctttggtggtggacatggtttcttgaccggaaccggtggtggttgtgg |
28783293 |
T |
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| Q |
184 |
ctttggaactggaggaggtttgtatactggagcaggtggtagaactggatgttcaacctttggtggtggacatggtttcttgactggaacaggaggagga |
283 |
Q |
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| T |
28783294 |
ctttggaactggaggaggtttgtatactggagcaggtggtagaactggatgttcaacctttggtggtggacatggtttcttgactggaacaggaggagga |
28783393 |
T |
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| Q |
284 |
agaggtttatgatatacaggcgtaggtggagggagaggtttatgataaacaggcacaggtggaggaagaggtt |
356 |
Q |
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| T |
28783394 |
agaggtttatgatatacaggcgtaggtggagggagaggtttatgataaacaggcacaggtggaggaagaggtt |
28783466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 91 - 273
Target Start/End: Original strand, 28783099 - 28783278
Alignment:
| Q |
91 |
tggaggtttgtatactggaacaggtggtaaaactggatgttcaacctttggtggtggacatggtttcttgaccggaaccggtggtggttgtggctttgga |
190 |
Q |
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| T |
28783099 |
tggaggcttatatattggaacaggtggtagaactgggtgctcaatctttggt---ggacatggtttcttgatcgggactggtggtggaagtgcctttgga |
28783195 |
T |
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| Q |
191 |
actggaggaggtttgtatactggagcaggtggtagaactggatgttcaacctttggtggtggacatggtttcttgactggaac |
273 |
Q |
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| T |
28783196 |
accggtggaggtttgtatactggaacaggtggtaaaactggatgttcaacctttggtggtggacatggtttcttgaccggaac |
28783278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 272 - 356
Target Start/End: Original strand, 28783448 - 28783532
Alignment:
| Q |
272 |
acaggaggaggaagaggtttatgatatacaggcgtaggtggagggagaggtttatgataaacaggcacaggtggaggaagaggtt |
356 |
Q |
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| T |
28783448 |
acaggtggaggaagaggtttctcatacacaggtgtaggtggagggagaggtttatggtaaacaggcacaggcggaggaagaggtt |
28783532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 349
Target Start/End: Original strand, 28783553 - 28783624
Alignment:
| Q |
278 |
ggaggaagaggtttatgatatacaggcgtaggtggagggagaggtttatgataaacaggcacaggtggagga |
349 |
Q |
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| T |
28783553 |
ggaggaagaggtttctcataaacaggtgtaggaggagggataggtttttcatagataggcacaggtggagga |
28783624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 278 - 356
Target Start/End: Original strand, 28783421 - 28783499
Alignment:
| Q |
278 |
ggaggaagaggtttatgatatacaggcgtaggtggagggagaggtttatgataaacaggcacaggtggaggaagaggtt |
356 |
Q |
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| T |
28783421 |
ggagggagaggtttatgataaacaggcacaggtggaggaagaggtttctcatacacaggtgtaggtggagggagaggtt |
28783499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 272 - 336
Target Start/End: Original strand, 28783514 - 28783578
Alignment:
| Q |
272 |
acaggaggaggaagaggtttatgatatacaggcgtaggtggagggagaggtttatgataaacagg |
336 |
Q |
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| T |
28783514 |
acaggcggaggaagaggtttctcgtagacaggtgtaggtggaggaagaggtttctcataaacagg |
28783578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 5 - 45
Target Start/End: Original strand, 3855632 - 3855672
Alignment:
| Q |
5 |
gataggaggctgtctgtcaaagataaaggacttcgccattg |
45 |
Q |
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| T |
3855632 |
gataggaggctgtctgtcaaagataaaggacttcgccattg |
3855672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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