View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11872_low_1 (Length: 444)
Name: NF11872_low_1
Description: NF11872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11872_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 8 - 425
Target Start/End: Original strand, 52409214 - 52409631
Alignment:
| Q |
8 |
cgagtgagatgaagttggcaatggtaataatgatacggttgcagctggtgctggggcaagttcgtcttcaaccactgacttggctggcagtggtgctgtt |
107 |
Q |
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| T |
52409214 |
cgagtgtgatgaagttggcaatggtaataatgatacggttgcagctggtgctggggcaagttcgtcttcaaccactgacttggctggcagtggtgctgtt |
52409313 |
T |
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| Q |
108 |
cttatgatgttactctgtgtgtgcccgatcattcttcttaccttcattgtctctgtaatatttcctgcaaagttggacataaagattaattgtacacaag |
207 |
Q |
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| T |
52409314 |
cttatgatgttactctgtgtgtgcccgatcattcttcttaccttcattgtctctgtaatatttcctgcaaagttggaaataaagattaattgtacacaag |
52409413 |
T |
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| Q |
208 |
cctaattaaggtgcaaattaactatatcaattttggttaataagaagtgttagaactaagttagaagattggtttgttaccatttaattcaaggtcggct |
307 |
Q |
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| T |
52409414 |
cctaattaaggtgcaaattaaatatatcaattttggttaataagaagtgttagaactaagttagaagattggtttgttaccatttaattcaaggtcggct |
52409513 |
T |
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| Q |
308 |
ttcgaattctctgacaagagaataagtgttggtgtgattaatgtaaggaaagcccaaaagacaaatgttggaattagagttctttctctcatcatcatat |
407 |
Q |
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| T |
52409514 |
ttcgaattctctgacaagagaataagtgttggtgtgattaatgtaaggaaagcccagaagacaaatgttggaattagagttctttctctcatcatcatat |
52409613 |
T |
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| Q |
408 |
cacaggagattaaactat |
425 |
Q |
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| T |
52409614 |
cacaggagattaaactat |
52409631 |
T |
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