View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11873_high_13 (Length: 339)
Name: NF11873_high_13
Description: NF11873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11873_high_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 11 - 323
Target Start/End: Original strand, 55082970 - 55083282
Alignment:
| Q |
11 |
cagagatgagcttgaattctgatgcttcaaggtatgaatgatttttgttgcttctaaactcgatgatgagtatatatatagactttgaaaaccaattgta |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55082970 |
cagaaatgagcttgaattctgatgcttcaaggtatgaatgatttttgttgcttctaaactcgatgatgagtatatatatagactttgaaaaccaattgta |
55083069 |
T |
|
| Q |
111 |
tggtggatgagttattcaatggggtttagtaggagacattactcattaatgatcacatggctttgttttggaggttttcactcaggattaggcttgtgaa |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
55083070 |
tggtggatgagttattcaatggggtttagtaggagacattactcactaatgatcacatggctttgttttggaggttctcactgaggattaggcttgtgaa |
55083169 |
T |
|
| Q |
211 |
agagaaatgtttcagacaagctctaaacataacaggtattattttgtccttgtttcgataggacaactagtatctattattgtttgtaattccatcaata |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
55083170 |
agagaaatgtttcagacaagctctaaacataacaggtattattttgtccttgtttcgataggacaactagtagctattattgtttgtaattccatcaata |
55083269 |
T |
|
| Q |
311 |
aaccatgaaatct |
323 |
Q |
| |
|
||||||||||||| |
|
|
| T |
55083270 |
aaccatgaaatct |
55083282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 83 - 250
Target Start/End: Original strand, 50907168 - 50907334
Alignment:
| Q |
83 |
tatatatagactttgaaaaccaattgtatggtggatgagttattcaatggggtttagtaggagacattactcattaatgatcacatggctttgttttgga |
182 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||| ||||||||| |||||| |||||||| |||||||||||||||||||| ||| ||||| |
|
|
| T |
50907168 |
tatatatagacttcgaaaaccaattgtatggtgaatgagttgttcaatggg-tttagttggagacatggctcattaatgatcacatggcactgtcttgga |
50907266 |
T |
|
| Q |
183 |
ggttttcactcaggattaggcttgtgaaagagaaatgtttcagacaagctctaaacataacaggtatt |
250 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||| |||||||||||| ||| |||||||||| ||||| |
|
|
| T |
50907267 |
ggttttcacttaggattaggcttgtgaaacagacctgtttcagacaatctccaaacataacaagtatt |
50907334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 38038395 - 38038202
Alignment:
| Q |
21 |
cttgaattctgatgcttcaaggtatgaatgatttttgttgcttctaaactcgatgatgagtatatatatagactttgaaaaccaattgtatggtggatga |
120 |
Q |
| |
|
|||||||| ||||||||| |||| ||||||||| |||||||||||||| | ||| || ||||||||| ||||||| ||||| ||||||||||| | || |
|
|
| T |
38038395 |
cttgaattatgatgcttcggggtaagaatgatttgtgttgcttctaaacccaatggtgggtatatata--gactttgcaaaccgattgtatggtgaagga |
38038298 |
T |
|
| Q |
121 |
gttattcaatggggtttagtaggagacattactcattaatgatcacatgg--ctttgttttggaggttttcactcaggattaggcttgtgaaagaga |
215 |
Q |
| |
|
| | ||||||||| |||||| |||||||| ||||||||||||||||||| | ||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
38038297 |
gctgttcaatggg-tttagttggagacatggctcattaatgatcacatggaacactgtcttggaggttttcacttaggattaggcttgtgaaagaga |
38038202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 21 - 224
Target Start/End: Complemental strand, 38041788 - 38041588
Alignment:
| Q |
21 |
cttgaattctgatgcttcaaggtatgaatgatttttgttgcttctaaactcgatgatgagtatatatatagactttgaaaaccaattgtatggtggatga |
120 |
Q |
| |
|
||||| || |||||||| ||||| ||||||||| |||||||| ||||| | |||||||||||||||| |||| || ||||||||||||||||| |||| |
|
|
| T |
38041788 |
cttgagttatgatgctttgaggtaagaatgatttgtgttgcttgtaaacccaatgatgagtatatata--gactgtgcaaaccaattgtatggtgaatga |
38041691 |
T |
|
| Q |
121 |
gttattcaatggggtttagtaggagacattactcattaatgatcacatggctttgttttggaggttttcactcaggattaggcttgtgaaagagaaatgt |
220 |
Q |
| |
|
| | ||| ||||| ||||| |||||||| ||| ||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
38041690 |
ggtgttcgatggg-tttagctggagacatggttcaataatgatcacatggcactgtcttggaggttttcactaaggattaggcttgtgaaagagacttgt |
38041592 |
T |
|
| Q |
221 |
ttca |
224 |
Q |
| |
|
|||| |
|
|
| T |
38041591 |
ttca |
38041588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 83 - 215
Target Start/End: Complemental strand, 38032073 - 38031941
Alignment:
| Q |
83 |
tatatatagactttgaaaaccaattgtatggtggatgagttattcaatggggtttagtaggagacattactcattaatgatcacatggctttgttttgga |
182 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| | ||||| |||||||||||||||||| | ||| ||||| |
|
|
| T |
38032073 |
tatatatagacttaagaaaccaattgtatggtgaatgagttattcaatggggtttagttagggacatgtctcattaatgatcacatgccactgtcttgga |
38031974 |
T |
|
| Q |
183 |
ggttttcactcaggattaggcttgtgaaagaga |
215 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||| |
|
|
| T |
38031973 |
ggttttcactgaggattaggtttgtgaaagaga |
38031941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 99 - 215
Target Start/End: Complemental strand, 38027221 - 38027105
Alignment:
| Q |
99 |
aaaccaattgtatggtggatgagttattcaatggggtttagtaggagacattactcattaatgatcacatggctttgttttggaggttttcactcaggat |
198 |
Q |
| |
|
|||| |||||||||||| |||||||||||||| ||||||| |||||||| || ||||||||||||||||| ||| ||||||||||||||| ||||| |
|
|
| T |
38027221 |
aaactaattgtatggtgaatgagttattcaatttagtttagttggagacatgtcttattaatgatcacatggcactgtcttggaggttttcactaaggat |
38027122 |
T |
|
| Q |
199 |
taggcttgtgaaagaga |
215 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
38027121 |
taggtttgtgaaagaga |
38027105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 124 - 215
Target Start/End: Complemental strand, 50912915 - 50912824
Alignment:
| Q |
124 |
attcaatggggtttagtaggagacattactcattaatgatcacatggctttgttttggaggttttcactcaggattaggcttgtgaaagaga |
215 |
Q |
| |
|
||||||||||||||| | |||||||| ||||||||||||||||| || ||| ||||||||||||| | |||||||| ||||||| ||||| |
|
|
| T |
50912915 |
attcaatggggtttaattggagacatagctcattaatgatcacatagcactgtcttggaggttttcattgaggattagacttgtgacagaga |
50912824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 90
Target Start/End: Complemental strand, 50913330 - 50913274
Alignment:
| Q |
34 |
gcttcaaggtatgaatgatttttgttgcttctaaactcgatgatgagtatatatata |
90 |
Q |
| |
|
||||||||||| ||||||||| |||||||| ||||||| | |||| |||||||||| |
|
|
| T |
50913330 |
gcttcaaggtaagaatgatttgtgttgcttgtaaactcaaggatggttatatatata |
50913274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 21608104 - 21607911
Alignment:
| Q |
21 |
cttgaattctgatgcttcaaggtatgaatgatttttgttgcttctaaactcgatgatgagtatatatatagactttgaaaaccaattgtatggtggatga |
120 |
Q |
| |
|
|||||||| ||||||||| ||||| ||||||||| | |||||||||||| | ||| || ||||||||| |||||| ||||| ||||||||||| | || |
|
|
| T |
21608104 |
cttgaattatgatgcttcgaggtaagaatgatttgttttgcttctaaacccaatggtgggtatatata--gactttacaaaccgattgtatggtgaagga |
21608007 |
T |
|
| Q |
121 |
gttattcaatggggtttagtaggagacattactcattaatgatcacatggctt--tgttttggaggttttcactcaggattaggcttgtgaaagaga |
215 |
Q |
| |
|
| | ||||||||| |||||| |||||||| ||| |||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
21608006 |
gctgttcaatggg-tttagttggagacatggctcgttaatgatcacatggcacactgtcttggaggttttcacttaggattaggcttgtgaaagaga |
21607911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University