View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11873_high_18 (Length: 205)
Name: NF11873_high_18
Description: NF11873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11873_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 10 - 189
Target Start/End: Complemental strand, 30905261 - 30905084
Alignment:
| Q |
10 |
gtagcataggcgacagacactgacatgtatcagacatcgaaaacaccatcaaaatctaaagcgtcggtgctgcgtaatttctatgaccatgaaaaaacca |
109 |
Q |
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| T |
30905261 |
gtagcataggcgacagacactgacatatatcagacatcgaaaacaccattaa--tctaaagcgtcggtgctgcgtaatttctatgaccatgaagaaacca |
30905164 |
T |
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| Q |
110 |
aaatgatacatagccacgtaagaaaaccaatattttcagtgatcttctataagaattacacatgaataattctattactt |
189 |
Q |
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| T |
30905163 |
aaatgatacatagccgcgtaagaaaaccaatattttcagtgatcttctataagaattacacatgaataattctattactt |
30905084 |
T |
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