View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11873_high_4 (Length: 521)
Name: NF11873_high_4
Description: NF11873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11873_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 19 - 509
Target Start/End: Original strand, 41647602 - 41648092
Alignment:
| Q |
19 |
agactgggtattggaacatccacattatcattgtcaaaggttaatgaataatgctacatgcaaggaccaaagctaatagccccaacaaataaggcaatta |
118 |
Q |
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| T |
41647602 |
agactgggtattgggacatccacattatcattgtcaaaggttaatgaatgatgctacatgcaaggaccaaagccaatagccccaacaaataaggcaatta |
41647701 |
T |
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| Q |
119 |
cttgatgttgaacatgtttttgatgttgctccttgctcgagcatttgcttcatttatgattcctttattgtgagtatatcaacccttgcctcattttgtc |
218 |
Q |
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| T |
41647702 |
cttgatgttgaacatgtttttgatgttgctccttgctcgagcatttgcttcatttatgattcctttattgtgagtatatcaacccatgcctcattttgtc |
41647801 |
T |
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| Q |
219 |
gacnnnnnnnnnnnnaaaccattgttataattggatatgatttgatcaactgcagcatgtgattaatttgtattctgtcatatttattgagtggcaaatg |
318 |
Q |
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| T |
41647802 |
gactttttattttttaaaccattgttacaattggatatgatttgatcaactgcagcatgtgactaatttgtattctgtcatatttattgagtggcaaatg |
41647901 |
T |
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| Q |
319 |
gagagagttggttgcatagtgtttatttaaaacctcaaggtaattgccacgaaagaggtgttttgttcggattaattgtttacagtcgaagattttacag |
418 |
Q |
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| T |
41647902 |
gagtgagttggttgtatagtgtttatttaaaacctcaaggtaatggccacgaaagaggtgttttgttcggattaattgtttacagtcgaagattttacag |
41648001 |
T |
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| Q |
419 |
attggttggttgctagatcgacaccaaactgtttgctgcaaagtttggatttgacttggggataggtggtgctggttgccgggtctctgct |
509 |
Q |
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| T |
41648002 |
attggttggttgctagatcgacaccaaactgtttgctgcaaagtttggatttgacttggggataggtggtgctggttgccgggtctctgct |
41648092 |
T |
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