View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11873_low_1 (Length: 709)

Name: NF11873_low_1
Description: NF11873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11873_low_1
NF11873_low_1
[»] chr5 (7 HSPs)
chr5 (195-707)||(1587223-1587735)
chr5 (361-707)||(1590654-1591000)
chr5 (467-679)||(1580751-1580963)
chr5 (467-679)||(1603852-1604064)
chr5 (77-171)||(1588267-1588361)
chr5 (205-423)||(1581034-1581243)
chr5 (205-423)||(1603572-1603781)
[»] chr3 (2 HSPs)
chr3 (195-707)||(19270050-19270583)
chr3 (77-128)||(19268280-19268331)
[»] chr7 (3 HSPs)
chr7 (378-629)||(39615906-39616175)
chr7 (77-162)||(39614942-39615029)
chr7 (648-695)||(39616233-39616280)


Alignment Details
Target: chr5 (Bit Score: 456; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 195 - 707
Target Start/End: Complemental strand, 1587735 - 1587223
Alignment:
Q  195 ttataacatcacctgattattgtcaagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttgagttttttaccctttttaaaactatttttg 294  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1587735 ttataacatcacctggttattgtcaagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttgagttttttaccctttttaaaactatttttg 1587636  T
Q  295 ctcacaacagttttccaaccacgtagaagactgtaatacttgttagttcccatgctccacttcctcaaagacattctgaactctctaaaagaagggtcca 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1587635 ctcacaacagttttccaaccacgtagaagactgtaatacttgttagttcccatgctccacttcctcaaagacattgtgaactctctaaaagaagggtcca 1587536  T
Q  395 acacgatcacttctaaaccaaccggtttatcactttcatccttttctatgtcggtgagaaaatcaactttgacttctttaagcggcattaaaagacgatt 494  Q
    ||||  |||||||||||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1587535 acacagtcacttctaaaccatcctgtttattactttcatccttttctatgtcggtgagaaaatcaactttgacttctttaagcggcattaaaagacgatt 1587436  T
Q  495 ttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactctttgatcttgttctcaacgtgaataggc 594  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1587435 ttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactctttgatcttgttctcaacgtgaataggc 1587336  T
Q  595 aatattggtggaggtgatgacaaatttttcttatcatgnnnnnnnggtttcatcttcttcgtggtctttggtttaactcttctttccacataagacatgc 694  Q
    |||||||||||||||||||||||||||| |||||||||       ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  1587335 aatattggtggaggtgatgacaaattttccttatcatgtttttttggtttgatcttcttcgtggtctttggtttaactcttctttccacataagacatgc 1587236  T
Q  695 tgctaccttcatc 707  Q
    |||||||||||||    
T  1587235 tgctaccttcatc 1587223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 361 - 707
Target Start/End: Original strand, 1590654 - 1591000
Alignment:
Q  361 aaagacattctgaactctctaaaagaagggtccaacacgatcacttctaaaccaaccggtttatcactttcatccttttctatgtcggtgagaaaatcaa 460  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  1590654 aaagacattctgaactctctaaaagaagggtccaacacaatcacttctaaaccaaccggtttatcactttcatccttttctatgtcggtgagaaaatcga 1590753  T
Q  461 ctttgacttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccatt 560  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  1590754 ctttgacttctttaagcggcattaaaagacgattttggtcatccctgagatccgacgcagacaattttttacacatgatatttttgatatcagtgccatt 1590853  T
Q  561 aaactctttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatcatgnnnnnnnggtttcatcttcttcgtggtc 660  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||       ||||| |||||||||||||||    
T  1590854 aaactctttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaattttccttatcatgtttttttggtttgatcttcttcgtggtc 1590953  T
Q  661 tttggtttaactcttctttccacataagacatgctgctaccttcatc 707  Q
    ||||||||||| ||||||||| ||||| |||||||||||||||||||    
T  1590954 tttggtttaacacttctttccgcataaaacatgctgctaccttcatc 1591000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 467 - 679
Target Start/End: Complemental strand, 1580963 - 1580751
Alignment:
Q  467 cttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactc 566  Q
    |||||||||| | ||||||||||||| ||||||  |  |||||||||||  || ||||||  ||||||||||||| |||||||||||||||||| |||||    
T  1580963 cttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcagtgccattcaactc 1580864  T
Q  567 tttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatcatgnnnnnnnggtttcatcttcttcgtggtctttggt 666  Q
    |||||||||| |||| || | ||||||||||||||| |||||||||||||| |||| |||||| ||       |||  ||||||||||||| ||||||||    
T  1580863 tttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgtttttttggtaccatcttcttcgtgctctttggt 1580764  T
Q  667 ttaactcttcttt 679  Q
    || ||||||||||    
T  1580763 ttcactcttcttt 1580751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 467 - 679
Target Start/End: Original strand, 1603852 - 1604064
Alignment:
Q  467 cttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactc 566  Q
    |||||||||| | ||||||||||||| ||||||  |  |||||||||||  || ||||||  ||||||||||||| |||||||||||||||||| |||||    
T  1603852 cttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcagtgccattcaactc 1603951  T
Q  567 tttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatcatgnnnnnnnggtttcatcttcttcgtggtctttggt 666  Q
    |||||||||| |||| || | ||||||||||||||| |||||||||||||| |||| |||||| ||       |||  ||||||||||||| ||||||||    
T  1603952 tttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgtttttttggtaccatcttcttcgtgctctttggt 1604051  T
Q  667 ttaactcttcttt 679  Q
    || ||||||||||    
T  1604052 ttcactcttcttt 1604064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 77 - 171
Target Start/End: Complemental strand, 1588361 - 1588267
Alignment:
Q  77 gaccaacatgatcaaggagaataatctagtcacttaaggtgtcatagccaaatttttaaaagcaacatactataaaacattttgcaatgctaact 171  Q
    ||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  1588361 gaccaacatgatcaaggagaataatctagtcccttaaggtgtcagagtcaaatttttaaaagcaacatactataaaacattttgcaatgctaact 1588267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 205 - 423
Target Start/End: Complemental strand, 1581243 - 1581034
Alignment:
Q  205 acctgattattgtcaagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttgagttttttaccctttttaaaactatttttgctcacaacag 304  Q
    |||| ||| ||||| |||| |||||||||||||  |||||||||||| ||||| ||||||||||||| |||  ||| |||||||||||  |||| ||||     
T  1581243 acctaatttttgtcgagtagaaagtgcaacttgctattgaccctaaatgtccaaatgttgagtttttgaccaatttcaaaactattttgcctcataacat 1581144  T
Q  305 ttttccaaccacgtagaagactgtaat-acttgttagttcccatgctccacttcctcaaagacattctgaactctctaaaagaagggtccaacacgatca 403  Q
     ||||||| |  ||| ||||||||||  |||| |          || ||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  1581143 gtttccaatcttgtacaagactgtaaagactttt----------gccccacttcctcaaagacattgtgaactctctaaaagaagggtccaacacaatca 1581054  T
Q  404 cttctaaaccaaccggttta 423  Q
    |||||| ||||||| |||||    
T  1581053 cttctataccaaccagttta 1581034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 205 - 423
Target Start/End: Original strand, 1603572 - 1603781
Alignment:
Q  205 acctgattattgtcaagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttgagttttttaccctttttaaaactatttttgctcacaacag 304  Q
    |||| ||| ||||| |||| |||||||||||||  |||||||||||| ||||| ||||||||||||| |||  ||| |||||||||||  |||| ||||     
T  1603572 acctaatttttgtcgagtagaaagtgcaacttgctattgaccctaaatgtccaaatgttgagtttttgaccaatttcaaaactattttgcctcataacat 1603671  T
Q  305 ttttccaaccacgtagaagactgtaat-acttgttagttcccatgctccacttcctcaaagacattctgaactctctaaaagaagggtccaacacgatca 403  Q
     ||||||| |  ||| ||||||||||  |||| |          || ||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  1603672 gtttccaatcttgtacaagactgtaaagactttt----------gccccacttcctcaaagacattgtgaactctctaaaagaagggtccaacacaatca 1603761  T
Q  404 cttctaaaccaaccggttta 423  Q
    |||||| ||||||| |||||    
T  1603762 cttctataccaaccagttta 1603781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 297; Significance: 1e-166; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 195 - 707
Target Start/End: Original strand, 19270050 - 19270583
Alignment:
Q  195 ttataacatcacctgattattgtcaagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttgagttttttaccctttttaaaactatttttg 294  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  19270050 ttataacatcacctgattattgtcgagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttaagttttttacccttttcaaaactatttttg 19270149  T
Q  295 ctcacaacagttttccaaccacgtagaagactgtaatacttgttagttcccatgctccacttcctcaaagacattctgaactctctaaaagaagggtcca 394  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||| | |||||||||||||||||||| |||||| ||||||||||||||||||||||||    
T  19270150 ctcacaacagttttccaaccatgtacaagactgtaatacttgttaatgcccatgctccacttcctcaacgacattgtgaactctctaaaagaagggtcca 19270249  T
Q  395 acacgatcacttctaaaccaaccggtttatcactttcatcc---------------------ttttctatgtcggtgagaaaatcaactttgacttcttt 473  Q
    |||| ||||||||||||||||| ||||| | | ||||||||                     ||||||||||||||||||||||||||||||||||||||    
T  19270250 acacaatcacttctaaaccaactggtttgttattttcatcctttttagttaaagacacgtctttttctatgtcggtgagaaaatcaactttgacttcttt 19270349  T
Q  474 aagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactctttgatc 573  Q
    || || |||||| |||||||||||||||||  |||||| ||| ||| |||||||||||| |||||||| |||||||||||||||||| ||||||||||||    
T  19270350 aatcgacattaatagacgattttggtcatctttgagatttgatgcaaacaattttttacccatgatatatttgatatcagtgccattcaactctttgatc 19270449  T
Q  574 ttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatcatgnnnnnnnggtttcatcttcttcgtggtctttggtttaactc 673  Q
    |||||||| | |||||||||||||||||||||||| ||||||||||||| |||||| ||       |||||||||||||||||| |||||||||| ||||    
T  19270450 ttgttctctatgtgaataggcaatattggtggaggagatgacaaattttccttatcttgtttttttggtttcatcttcttcgtgctctttggtttcactc 19270549  T
Q  674 ttctttccacataagacatgctgctaccttcatc 707  Q
    |||||||  | | ||||||||| |||||||||||    
T  19270550 ttctttctgcgtgagacatgcttctaccttcatc 19270583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 19268280 - 19268331
Alignment:
Q  77 gaccaacatgatcaaggagaataatctagtcacttaaggtgtcatagccaaa 128  Q
    |||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  19268280 gaccaacatgatcaaggagaataatctagtcatttaaggtgtcatagtcaaa 19268331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 378 - 629
Target Start/End: Original strand, 39615906 - 39616175
Alignment:
Q  378 tctaaaagaagggtccaacacgatcacttctaaaccaaccggtttatcactttcatccttttc----------------tatgtc--ggtgagaaaatca 459  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||  |||||||||||||                | ||||  |||||||||| ||    
T  39615906 tctaaaataagggtccaacacaatcacttctaaaccaaccggtttatcgttttcatccttttcatctaaagtctccttttctgtcttggtgagaaaacca 39616005  T
Q  460 actttgacttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccat 559  Q
    | || | |||||||||| ||||||||||||||| ||||| | ||   || |||||||||| ||||||| ||  ||||||||| | |||||||||||||||    
T  39616006 agttcgtcttctttaagtggcattaaaagacgactttggccttcatcgatatctgacgcaaacaatttctttgacatgatatatctgatatcagtgccat 39616105  T
Q  560 taaactctttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatc 629  Q
    | ||||| |||||||||||||  || | |||||| |||||||| |||||| | | |||||||||||||||    
T  39616106 tcaactccttgatcttgttcttgacattaataggtaatattggcggaggtaaagccaaatttttcttatc 39616175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 77 - 162
Target Start/End: Original strand, 39614942 - 39615029
Alignment:
Q  77 gaccaacatgatcaaggagaataatctag--tcacttaaggtgtcatagccaaatttttaaaagcaacatactataaaacattttgca 162  Q
    |||||||||||||||||| |||||| |||  |||| ||||||||||||| |||||| |||||||||||||| ||||||||||||||||    
T  39614942 gaccaacatgatcaaggaaaataatgtagagtcacctaaggtgtcatagtcaaattgttaaaagcaacataatataaaacattttgca 39615029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 648 - 695
Target Start/End: Original strand, 39616233 - 39616280
Alignment:
Q  648 cttcttcgtggtctttggtttaactcttctttccacataagacatgct 695  Q
    |||||||||||||||||||||   |||||||||| |||||||||||||    
T  39616233 cttcttcgtggtctttggtttcgttcttctttccgcataagacatgct 39616280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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