View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11873_low_12 (Length: 412)

Name: NF11873_low_12
Description: NF11873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11873_low_12
NF11873_low_12
[»] scaffold0140 (1 HSPs)
scaffold0140 (1-340)||(35481-35825)
[»] chr1 (5 HSPs)
chr1 (122-339)||(52947347-52947565)
chr1 (64-345)||(46652563-46652846)
chr1 (64-333)||(46651367-46651638)
chr1 (274-344)||(36145339-36145409)
chr1 (64-108)||(46604670-46604714)
[»] chr5 (3 HSPs)
chr5 (64-339)||(42775420-42775697)
chr5 (252-340)||(42776789-42776878)
chr5 (309-341)||(30381603-30381635)
[»] chr7 (9 HSPs)
chr7 (265-343)||(28848554-28848632)
chr7 (64-342)||(43546512-43546792)
chr7 (252-340)||(25008091-25008180)
chr7 (265-341)||(43545340-43545417)
chr7 (252-340)||(25009456-25009545)
chr7 (252-340)||(28849939-28850028)
chr7 (274-340)||(31392057-31392123)
chr7 (274-340)||(31393653-31393719)
chr7 (274-343)||(21715068-21715137)
[»] scaffold0018 (1 HSPs)
scaffold0018 (64-339)||(193591-193868)
[»] chr4 (9 HSPs)
chr4 (176-340)||(39929249-39929414)
chr4 (265-341)||(39927931-39928008)
chr4 (274-341)||(55947358-55947425)
chr4 (274-340)||(42889804-42889870)
chr4 (274-340)||(44251604-44251670)
chr4 (309-343)||(52477641-52477675)
chr4 (64-196)||(5236379-5236512)
chr4 (15-111)||(13506954-13507051)
chr4 (274-342)||(10337101-10337169)
[»] chr3 (5 HSPs)
chr3 (176-340)||(45981406-45981571)
chr3 (265-340)||(8391400-8391476)
chr3 (252-333)||(8392774-8392856)
chr3 (252-343)||(45982770-45982862)
chr3 (309-345)||(3990874-3990910)
[»] chr2 (5 HSPs)
chr2 (176-344)||(20587034-20587203)
chr2 (64-339)||(20588241-20588518)
chr2 (274-340)||(28563375-28563441)
chr2 (64-112)||(28563604-28563652)
chr2 (309-341)||(28917134-28917166)
[»] scaffold0524 (2 HSPs)
scaffold0524 (64-341)||(8851-9130)
scaffold0524 (274-336)||(7701-7763)
[»] scaffold0472 (2 HSPs)
scaffold0472 (172-350)||(10337-10516)
scaffold0472 (252-340)||(9019-9108)
[»] scaffold0369 (1 HSPs)
scaffold0369 (252-340)||(8241-8330)
[»] chr8 (2 HSPs)
chr8 (64-333)||(35505528-35505799)
chr8 (274-341)||(25264338-25264405)
[»] chr6 (5 HSPs)
chr6 (309-349)||(24051245-24051285)
chr6 (269-340)||(7678636-7678707)
chr6 (274-338)||(2956229-2956293)
chr6 (309-349)||(9699185-9699225)
chr6 (201-348)||(31994675-31994823)
[»] scaffold0141 (1 HSPs)
scaffold0141 (309-343)||(10302-10336)


Alignment Details
Target: scaffold0140 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 35825 - 35481
Alignment:
Q  1 taaacagagggaaaaagaagatgaaaactacaatttttaaattaaaaatttgatatttaagacttttt-aatttcatccctttgcactctttcgtttttc 99  Q
    |||||||| |||  |||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||    
T  35825 taaacagaaggatgaagaagatgaaaactacagtttttaaattaaaaatttgatatttatgacttttttaatttcatccctttgcactttttcgtttttc 35726  T
Q  100 gttttggtccctgaatctagccactccccaactcttttgacacgtaacactccttttgccaggtcacagtaagccacgtgtgtctccgtctgccacctag 199  Q
     || | |||||| |||||||||||| |||| ||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||| |    
T  35725 tttgtagtccctcaatctagccactacccagctcttttgacacgtaaccctccttttgccaagtcaccgtaagccacgtgtgtctccgtctgccacctcg 35626  T
Q  200 ccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaaag-cttacaaggagagttttgaaacaaaaaa---gatacaaggacgaatt 295  Q
    || ||||||||| ||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||    ||||| |||||||||    
T  35625 ccgtttttgtaacgggagttaacgggaatgaccatttgcaaaacgaaaaaagacttacaaggagagttttgaaacaaaaaaaagaatacagggacgaatt 35526  T
Q  296 gcaaaaatacgtgaaattacagggacggtttgcgtatttaagcct 340  Q
    |||||||| || ||||||||||||||||||||| |||||||||||    
T  35525 gcaaaaatgcgcgaaattacagggacggtttgcatatttaagcct 35481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 135; Significance: 3e-70; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 122 - 339
Target Start/End: Complemental strand, 52947565 - 52947347
Alignment:
Q  122 actccccaactcttttgacacgtaacactccttttgccaggtcacagtaagccacgtgtgtctccgtctgccacctagccatttttgtaatgggagttaa 221  Q
    |||| ||||||||||||||||||||| ||||||||| || |||||| |||||||||| |||||||| ||||||||| ||| ||||||||| |||||||||    
T  52947565 actcaccaactcttttgacacgtaaccctccttttgtcaagtcacactaagccacgtatgtctccgcctgccacctcgccgtttttgtaacgggagttaa 52947466  T
Q  222 tgggaaggaccatttgcaaaacgaaaaaagcttacaaggagagttttgaaacaa-aaaagatacaaggacgaattgcaaaaatacgtgaaattacaggga 320  Q
     |||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||  ||||||||| ||    
T  52947465 cgggaagaatcatttgcaaaacgaaaaaagcttacaaggagagttttgaaacaaaaaaagatacatggacgaattgcaaaaatgcgcaaaattacagaga 52947366  T
Q  321 cggtttgcgtatttaagcc 339  Q
    |||||||| ||||||||||    
T  52947365 cggtttgcatatttaagcc 52947347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 64 - 345
Target Start/End: Original strand, 46652563 - 46652846
Alignment:
Q  64 tttttaatttcatccctttgcactctttcgtttttcgttttggtccctgaat-ctagccactccccaactcttttgacacgtaacactccttttgccagg 162  Q
    ||||||||||||||||| |||| | || ||||||| ||||||||||||   | ||| ||||||  || |||| ||||||| |||     |||||||||      
T  46652563 tttttaatttcatccctctgcaattttgcgtttttggttttggtccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaac 46652662  T
Q  163 tcacagtaagccacgtgtgtctccgtctgccacctagccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaaagcttacaaggag 262  Q
    ||||| |  ||| |||||||||||||||||||||    | ||||||||| ||||||||| |||| |||| | |||||||  |  |  | ||||||||||     
T  46652663 tcacacttcgccgcgtgtgtctccgtctgccaccataacgtttttgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttacaaggat 46652762  T
Q  263 agttttgaaacaaaa-aagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcgtatttaagcctaaata 345  Q
      ||||||||||||| |||||||| |||||| ||||||||| ||| ||||||||||||||| ||| | ||||||||||||||||    
T  46652763 gattttgaaacaaaaaaagatacagggacgatttgcaaaaacacgcgaaattacagggacgttttacatatttaagcctaaata 46652846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 64 - 333
Target Start/End: Complemental strand, 46651638 - 46651367
Alignment:
Q  64 tttttaatttcatccctttgcactctttcgtttttcgttttggtccctgaat-ctagccactccccaactcttttgacacgtaacactccttttgccagg 162  Q
    ||||||||||||||||| |||| | || || |||| ||||||||||||   | ||||||||||  || |||| ||||||| |||     |||||||||      
T  46651638 tttttaatttcatccctctgcaattttgcgcttttggttttggtccctcctttctagccactcatcatctctcttgacacataagcaagcttttgccaac 46651539  T
Q  163 tcacagtaagccacgtgtgtctccgtctgccacctagccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaa-agcttacaagga 261  Q
    ||||| |   ||||||||||||||||||||||||    | ||||||||| ||||||||| |||| |||  | ||||||| |||     | ||||||||||    
T  46651538 tcacacttcaccacgtgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacgggagggatgaattgcaaa-cgattggcaacttacaagga 46651440  T
Q  262 gagttttgaaacaaaaaa-gatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcgtatt 333  Q
       ||||||||||||||| |||||| |||||| ||||||||| ||| ||||||||||||||| ||||| ||||    
T  46651439 tgattttgaaacaaaaaaagatacagggacgatttgcaaaaacacgcgaaattacagggacgttttgcatatt 46651367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 344
Target Start/End: Complemental strand, 36145409 - 36145339
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcgtatttaagcctaaat 344  Q
    |||||||||||| |||||||    |||||||||  |||||||||||||| ||| | |||||||||||||||    
T  36145409 aaaaaagatacagggacgaaaacaaaaaatacgccaaattacagggacgatttacatatttaagcctaaat 36145339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 108
Target Start/End: Complemental strand, 46604714 - 46604670
Alignment:
Q  64 tttttaatttcatccctttgcactctttcgtttttcgttttggtc 108  Q
    |||| ||||||||||||||||||| || ||||||| |||||||||    
T  46604714 ttttcaatttcatccctttgcacttttacgtttttggttttggtc 46604670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 64 - 339
Target Start/End: Complemental strand, 42775697 - 42775420
Alignment:
Q  64 tttttaatttcatccctttgcactctttcgtttttcgttttggtccctgaat-ctagccactccccaactcttttgacacgtaacactccttttgccagg 162  Q
    ||||||||||||||||| |||| | || ||||||| ||||||||||||   | ||| ||||||  || |||| ||||||| |||     |||||||||      
T  42775697 tttttaatttcatccctctgcaattttgcgtttttggttttggtccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaac 42775598  T
Q  163 tcacagtaagccacgtgtgtctccgtctgccacctagccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaaagcttacaaggag 262  Q
    ||||| |  ||| |||||||||||||||||||||    | ||||||||| ||||||||| |||| |||| | |||||||  |  |  | ||||||||||     
T  42775597 tcacacttcgccgcgtgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttacaaggat 42775498  T
Q  263 agttttgaaacaaaaaa-gatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcgtatttaagcc 339  Q
      ||||||||||||||| ||||||||||||| ||||||||| ||| ||||||||||| ||| ||| | ||||||||||    
T  42775497 gattttgaaacaaaaaaagatacaaggacgatttgcaaaaacacgcgaaattacaggaacgttttacatatttaagcc 42775420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 252 - 340
Target Start/End: Original strand, 42776789 - 42776878
Alignment:
Q  252 cttacaaggagagttttgaaacaaaa-aagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcgtatttaagcct 340  Q
    ||||||||||   ||||||||||||| |||||||| |||||| ||||||||| ||| ||||||||||||||||||||| |||| ||||||    
T  42776789 cttacaaggatgattttgaaacaaaaaaagatacagggacgatttgcaaaaacacgcgaaattacagggacggtttgcatattaaagcct 42776878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 341
Target Start/End: Original strand, 30381603 - 30381635
Alignment:
Q  309 aaattacagggacggtttgcgtatttaagccta 341  Q
    |||||||||||||||||||| ||||||||||||    
T  30381603 aaattacagggacggtttgcatatttaagccta 30381635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 265 - 343
Target Start/End: Complemental strand, 28848632 - 28848554
Alignment:
Q  265 ttttgaaacaaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcgtatttaagcctaaa 343  Q
    ||||||||||||||||||||| |||||| ||||||||| ||| ||||||||||||||| ||| | ||||||||||||||    
T  28848632 ttttgaaacaaaaaagatacagggacgatttgcaaaaacacgcgaaattacagggacgttttacatatttaagcctaaa 28848554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 64 - 342
Target Start/End: Original strand, 43546512 - 43546792
Alignment:
Q  64 tttttaatttcatccctttgcactctttcgtttttcgttttggtccctgaat-ctagccactccccaactcttttgacacgtaacactccttttgccagg 162  Q
    ||||||||||||||||| |||| | || ||||||| ||||||||||||   | ||| ||||||  || |||| ||||||| |||     |||||||||      
T  43546512 tttttaatttcatccctctgcaattttgcgtttttggttttggtccctcctttctaaccactcatcatctctcttgacacataagcaaacttttgccaac 43546611  T
Q  163 tcacagtaagccacgtgtgtctccgtctgccacctagccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaaagcttacaaggag 262  Q
    ||||| |  ||| |||||||||||||||||||||      ||||||||| ||||||||| |||| |||| | |||||||  |  |  | ||||||||||     
T  43546612 tcacacttcgccgcgtgtgtctccgtctgccaccacaatgtttttgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttacaaggat 43546711  T
Q  263 agttttgaaacaaaaaaga-tacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcgtatttaagcctaa 342  Q
      |||| |||||||||| | |||| |||||| ||||||||| ||| ||||||||||||||| ||| | |||||||||||||    
T  43546712 gattttaaaacaaaaaaaaatacagggacgatttgcaaaaacacgcgaaattacagggacgttttacatatttaagcctaa 43546792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 252 - 340
Target Start/End: Complemental strand, 25008180 - 25008091
Alignment:
Q  252 cttacaaggagagttttgaaacaaaaaa-gatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcgtatttaagcct 340  Q
    ||||||||||   ||||||||||||||| |||||| |||||| ||||||||| ||| ||||||||||||||| ||| | |||||||||||    
T  25008180 cttacaaggatgattttgaaacaaaaaaagatacagggacgatttgcaaaaacacgcgaaattacagggacgttttacatatttaagcct 25008091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 341
Target Start/End: Complemental strand, 43545417 - 43545340
Alignment:
Q  265 ttttgaaacaaaaaa-gatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcgtatttaagccta 341  Q
    ||||||||||||||| |||||| |||||| ||||||||| ||| ||||||||||||||| ||||| |||| |||||||    
T  43545417 ttttgaaacaaaaaaagatacagggacgatttgcaaaaacacgcgaaattacagggacgttttgcatattaaagccta 43545340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 340
Target Start/End: Original strand, 25009456 - 25009545
Alignment:
Q  252 cttacaaggagagttttgaaacaaaa-aagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcgtatttaagcct 340  Q
    ||||||||||   ||||||||||||| |||||||| |||||| ||||||||| ||| ||||||||||||||| ||| | |||| ||||||    
T  25009456 cttacaaggatgattttgaaacaaaaaaagatacagggacgatttgcaaaaacacgcgaaattacagggacgttttacatattaaagcct 25009545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 340
Target Start/End: Original strand, 28849939 - 28850028
Alignment:
Q  252 cttacaaggagagttttgaaacaaaa-aagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcgtatttaagcct 340  Q
    ||||||||||   ||||||||||||| |||||||| |||||| ||||||||| ||| ||| ||||||||||| ||||| |||| ||||||    
T  28849939 cttacaaggatgattttgaaacaaaaaaagatacagggacgatttgcaaaaacacgcgaagttacagggacgttttgcatattaaagcct 28850028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 340
Target Start/End: Complemental strand, 31392123 - 31392057
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcgtatttaagcct 340  Q
    |||||||||||| |||||||   |||||| |||| |||||||||||||| ||| | |||||||||||    
T  31392123 aaaaaagatacagggacgaaaaccaaaaacacgtcaaattacagggacgatttacatatttaagcct 31392057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 340
Target Start/End: Original strand, 31393653 - 31393719
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcgtatttaagcct 340  Q
    ||||||||||||||||||||   |||||| |||  |||||||||||||| ||| | |||||||||||    
T  31393653 aaaaaagatacaaggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaagcct 31393719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 343
Target Start/End: Complemental strand, 21715137 - 21715068
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcgtatttaagcctaaa 343  Q
    |||||||||||| |||||||   |||||| |||  |||||||||||||| ||| | ||||||||||||||    
T  21715137 aaaaaagatacagggacgaaaatcaaaaacacgccaaattacagggacgatttacatatttaagcctaaa 21715068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 64 - 339
Target Start/End: Complemental strand, 193868 - 193591
Alignment:
Q  64 tttttaatttcatccctttgcactctttcgtttttcgttttggtccctgaat-ctagccactccccaactcttttgacacgtaacactccttttgccagg 162  Q
    ||||||||||||||||| |||| | || ||||||| ||||||||||||   | ||| ||||||  || | || ||||||| |||     |||||||||      
T  193868 tttttaatttcatccctctgcaattttgcgtttttggttttggtccctcctttctaaccactcatcatcgctcttgacacataagcaagcttttgccaac 193769  T
Q  163 tcacagtaagccacgtgtgtctccgtctgccacctagccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaaagcttacaaggag 262  Q
    ||||| |  ||| |||||||||||||||||||||    | ||||||||| ||||||||| |||| |||| | |||||||  |  |  | ||||||||||     
T  193768 tcacacttcgccgcgtgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacgggagggacgaattgcaaacggctattaacttacaaggat 193669  T
Q  263 agttttgaaacaaaaaa-gatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcgtatttaagcc 339  Q
      ||||||||||||||| |||||| |||||| ||||||||| ||| |||||||||| |||| ||| | ||||||||||    
T  193668 gattttgaaacaaaaaaagatacagggacgatttgcaaaaacacgcgaaattacagagacgttttacatatttaagcc 193591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 176 - 340
Target Start/End: Original strand, 39929249 - 39929414
Alignment:
Q  176 cgtgtgtctccgtctgccacctagccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaaagcttacaaggagagttttgaaacaa 275  Q
    |||||||||||||||||||||    | ||||||||| ||||||||| |||| |||| | |||||||  |  |  | ||||||||||   |||||||||||    
T  39929249 cgtgtgtctccgtctgccaccataacgtttttgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttacaaggatgattttgaaacaa 39929348  T
Q  276 aa-aagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcgtatttaagcct 340  Q
    || |||||||| |||||| ||||||||| ||| ||||||||| ||||| ||| | |||||||||||    
T  39929349 aaaaagatacagggacgatttgcaaaaacacgcgaaattacatggacgttttacatatttaagcct 39929414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 341
Target Start/End: Complemental strand, 39928008 - 39927931
Alignment:
Q  265 ttttgaaacaaaaaa-gatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcgtatttaagccta 341  Q
    ||||||||||||||| |||||| |||||| ||||||||| ||| ||||||||||||||| ||||| |||| |||||||    
T  39928008 ttttgaaacaaaaaaagatacagggacgatttgcaaaaacacgcgaaattacagggacgttttgcatattaaagccta 39927931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 341
Target Start/End: Complemental strand, 55947425 - 55947358
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcgtatttaagccta 341  Q
    |||||||||||| |||||||   ||||||||||| |||||||||||||| ||| | ||||||||||||    
T  55947425 aaaaaagatacagggacgaaaaccaaaaatacgtcaaattacagggacgatttacatatttaagccta 55947358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 340
Target Start/End: Original strand, 42889804 - 42889870
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcgtatttaagcct 340  Q
    ||||||||||||||||||||    ||||| ||||||| ||||||||||| ||| | |||||||||||    
T  42889804 aaaaaagatacaaggacgaaaacaaaaaacacgtgaacttacagggacgatttacatatttaagcct 42889870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 340
Target Start/End: Complemental strand, 44251670 - 44251604
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcgtatttaagcct 340  Q
    ||||||||||||||||||||   |||||| |||  |||||||||||||| ||| | |||||||||||    
T  44251670 aaaaaagatacaaggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaagcct 44251604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 343
Target Start/End: Complemental strand, 52477675 - 52477641
Alignment:
Q  309 aaattacagggacggtttgcgtatttaagcctaaa 343  Q
    |||||||||||||||||||| ||||||||||||||    
T  52477675 aaattacagggacggtttgcatatttaagcctaaa 52477641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 196
Target Start/End: Complemental strand, 5236512 - 5236379
Alignment:
Q  64 tttttaatttcatccctttgcactctttcgtttttcgttttggtccct-gaatctagccactccccaactcttttgacacgtaacactccttttgccagg 162  Q
    |||||||||||||||||||||| | || ||||||| || |||||||||    |||||||||||  || |||| ||||||| |||  || |||||||||      
T  5236512 tttttaatttcatccctttgcaattttgcgtttttggtcttggtccctcctttctagccactcatcatctctcttgacacataattctgcttttgccaac 5236413  T
Q  163 tcacagtaagccacgtgtgtctccgtctgccacc 196  Q
    ||||  |  ||||||||||||||| ||| |||||    
T  5236412 tcaccattcgccacgtgtgtctccatctaccacc 5236379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 111
Target Start/End: Complemental strand, 13507051 - 13506954
Alignment:
Q  15 aagaagatgaaaactacaatttttaaattaaaaattt-gatatttaagactttttaatttcatccctttgcactctttcgtttttcgttttggtccct 111  Q
    ||||||||||||| ||   ||||||||||  |||||| ||| |||| || ||||||||||||||||| |||||| ||  ||||||  |||||||||||    
T  13507051 aagaagatgaaaaataatgtttttaaatttcaaattttgatgtttacgagtttttaatttcatccctatgcacttttgtgtttttgtttttggtccct 13506954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 342
Target Start/End: Complemental strand, 10337169 - 10337101
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcgtatttaagcctaa 342  Q
    ||||||||||||||||||||   |||||| |||  |||||||||||||| ||| | |||||||| ||||    
T  10337169 aaaaaagatacaaggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaagtctaa 10337101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 176 - 340
Target Start/End: Complemental strand, 45981571 - 45981406
Alignment:
Q  176 cgtgtgtctccgtctgccacctagccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaaagcttacaaggagagttttgaaacaa 275  Q
    ||||||||||||||||| |||    | ||||||||| ||||||||| |||| |||| | |||||||  |  |  | ||||||||||   |||||||||||    
T  45981571 cgtgtgtctccgtctgcaaccacaacgtttttgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttacaaggatgattttgaaacaa 45981472  T
Q  276 aaaa-gatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcgtatttaagcct 340  Q
    |||| ||||||||||||| ||||||||| ||| ||||||||| ||||| ||| | |||||||||||    
T  45981471 aaaaagatacaaggacgatttgcaaaaacacgcgaaattacaaggacgttttacatatttaagcct 45981406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 265 - 340
Target Start/End: Complemental strand, 8391476 - 8391400
Alignment:
Q  265 ttttgaaacaaaaaa-gatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcgtatttaagcct 340  Q
    ||||||||||||||| ||||||||||||| ||||||||| ||| ||||||||||||||| ||| | |||||||||||    
T  8391476 ttttgaaacaaaaaaagatacaaggacgatttgcaaaaacacgcgaaattacagggacgttttacatatttaagcct 8391400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 252 - 333
Target Start/End: Original strand, 8392774 - 8392856
Alignment:
Q  252 cttacaaggagagttttgaaacaaaa-aagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcgtatt 333  Q
    ||||||||||   ||||||||||||| |||||||| |||||| ||||||||| ||| ||||||||||||||||||||| ||||    
T  8392774 cttacaaggatgattttgaaacaaaaaaagatacagggacgatttgcaaaaacacgcgaaattacagggacggtttgcatatt 8392856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 343
Target Start/End: Original strand, 45982770 - 45982862
Alignment:
Q  252 cttacaaggagagttttgaaacaaaa-aagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcgtatttaagcctaaa 343  Q
    ||||||||||   ||||||||||||| |||||||| ||| || ||||||||| | | ||||||||||||||| ||||| |||| |||||||||    
T  45982770 cttacaaggatgattttgaaacaaaaaaagatacagggatgatttgcaaaaacatgcgaaattacagggacgatttgcatattaaagcctaaa 45982862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 345
Target Start/End: Original strand, 3990874 - 3990910
Alignment:
Q  309 aaattacagggacggtttgcgtatttaagcctaaata 345  Q
    |||||||||||||||||||| ||||||| ||||||||    
T  3990874 aaattacagggacggtttgcatatttaaacctaaata 3990910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 176 - 344
Target Start/End: Complemental strand, 20587203 - 20587034
Alignment:
Q  176 cgtgtgtctccgtctgccacctagccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaaagcttacaaggagagttttgaaacaa 275  Q
    |||||||||||||||||||||    | ||||||||| |||||||||  ||| |||| | |||||||  |  |  | ||||||||||   |||||||||||    
T  20587203 cgtgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacaggagggacgaattgcaaacggctagtaacttacaaggatgattttgaaacaa 20587104  T
Q  276 aaaa-gatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcgtatttaagcctaaat 344  Q
    |||| |||||| |||||| ||||||||| ||| ||||||||||||||| ||| | |||||||||| ||||    
T  20587103 aaaaagatacagggacgatttgcaaaaacacgcgaaattacagggacgttttacatatttaagccaaaat 20587034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 64 - 339
Target Start/End: Original strand, 20588241 - 20588518
Alignment:
Q  64 tttttaatttcatccctttgcactctttcgtttttcgttttggtccctgaat-ctagccactccccaactcttttgacacgtaacactccttttgccagg 162  Q
    ||||||||||||||||| |||| | || || |||| ||||||||||||   | ||||||||||  || |||| ||||||| |||     |||||||||      
T  20588241 tttttaatttcatccctctgcaattttgcgcttttggttttggtccctcctttctagccactcatcatctctcttgacacataagcaagcttttgccaac 20588340  T
Q  163 tcacagtaagccacgtgtgtctccgtctgccacctagccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaa-agcttacaagga 261  Q
    ||||| |   |||||||||||| |||||||||||    | ||||||||| ||||||||| |||| |||| | ||||||| |||     | ||||||||||    
T  20588341 tcacacttcaccacgtgtgtctacgtctgccaccacaacgtttttgtaacgggagttaacgggagggacgaattgcaaa-cgattggcaacttacaagga 20588439  T
Q  262 gagttttgaaacaaaa-aagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcgtatttaagcc 339  Q
       ||||||||||||| ||||||||  ||||| ||||||||| ||| ||||||||||||||| ||| | ||||||||||    
T  20588440 tgattttgaaacaaaaaaagatacagagacgatttgcaaaaacacgcgaaattacagggacgttttacatatttaagcc 20588518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 340
Target Start/End: Complemental strand, 28563441 - 28563375
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcgtatttaagcct 340  Q
    ||||||||||||||||||||   |||||| |||  |||||||||||||| ||| | |||||||||||    
T  28563441 aaaaaagatacaaggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaagcct 28563375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 64 - 112
Target Start/End: Complemental strand, 28563652 - 28563604
Alignment:
Q  64 tttttaatttcatccctttgcactctttcgtttttcgttttggtccctg 112  Q
    |||||||||| ||||||||| ||  |||||||||| |||||||||||||    
T  28563652 tttttaattttatccctttgtaccttttcgtttttggttttggtccctg 28563604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 341
Target Start/End: Original strand, 28917134 - 28917166
Alignment:
Q  309 aaattacagggacggtttgcgtatttaagccta 341  Q
    |||||||||||||||||||| ||||||||||||    
T  28917134 aaattacagggacggtttgcatatttaagccta 28917166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 64 - 341
Target Start/End: Original strand, 8851 - 9130
Alignment:
Q  64 tttttaatttcatccctttgcactctttcgtttttcgttttggtccctgaat-ctagccactccccaactcttttgacacgtaacactccttttgccagg 162  Q
    ||||||||||||||||| |||| | || || |||| ||||||||||||   | ||||||||||  || |||| ||||||| |||||   |||||||||      
T  8851 tttttaatttcatccctctgcaattttgcggttttggttttggtccctcctttctagccactcatcatctctcttgacacataacaaagcttttgccaac 8950  T
Q  163 tcacagtaagccacgtgtgtctccgtctgccacctagccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaa-agcttacaagga 261  Q
    ||||| |   |||||||||||||||||| |||||    | ||||||||| ||||||||| |||| |||| | ||||||| |||     | ||||||||||    
T  8951 tcacacttcaccacgtgtgtctccgtctaccaccacaacgtttttgtaacgggagttaacgggagggacgaattgcaaa-cgattggcaacttacaagga 9049  T
Q  262 gagttttgaaacaaaa-aagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcgtatttaagccta 341  Q
       || |||||||||| |||||||| |||||| ||||||||| |||  |||||||||||||| ||||| |||| |||||||    
T  9050 tgattctgaaacaaaaaaagatacagggacgatttgcaaaaacacgcaaaattacagggacgttttgcatattaaagccta 9130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 336
Target Start/End: Complemental strand, 7763 - 7701
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcgtatttaa 336  Q
    |||||||||||| |||||| ||||||||| ||| ||||||||||||||| ||| | |||||||    
T  7763 aaaaaagatacagggacgatttgcaaaaacacgcgaaattacagggacgttttacatatttaa 7701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 172 - 350
Target Start/End: Original strand, 10337 - 10516
Alignment:
Q  172 gccacgtgtgtctccgtctgccacctagccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaaagcttacaaggagagttttgaa 271  Q
    |||||||||||||||||||||||||    | ||||||||| ||||||||| |||| |||| | |||||||  |  |  | |||| |||||   |||||||    
T  10337 gccacgtgtgtctccgtctgccaccacaacgtttttgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttataaggatgattttgaa 10436  T
Q  272 acaaaa-aagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcgtatttaagcctaaataaaata 350  Q
    |||||| |||||||| |||||| ||||||||| ||| ||||||| || || | ||| | |||||||||||||||| ||||    
T  10437 acaaaaaaagatacagggacgatttgcaaaaacacgcgaaattatagagatgttttacatatttaagcctaaatataata 10516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 340
Target Start/End: Complemental strand, 9108 - 9019
Alignment:
Q  252 cttacaaggagagttttgaaacaaaaaa-gatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcgtatttaagcct 340  Q
    ||||||||||   ||||||||||||||| ||||||||||||| ||||||||  ||| ||||||||||| ||| ||||| |||| ||||||    
T  9108 cttacaaggatgattttgaaacaaaaaaagatacaaggacgatttgcaaaatcacgcgaaattacaggaacgttttgcatattaaagcct 9019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 252 - 340
Target Start/End: Original strand, 8241 - 8330
Alignment:
Q  252 cttacaaggagagttttgaaacaaaaaa-gatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcgtatttaagcct 340  Q
    ||||||||||   ||||||||||||||| |||| | |||||| ||||||||| ||| ||||||||||||||| ||||| |||| ||||||    
T  8241 cttacaaggatgattttgaaacaaaaaaagatatagggacgatttgcaaaaacacgcgaaattacagggacgttttgcatattcaagcct 8330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 333
Target Start/End: Complemental strand, 35505799 - 35505528
Alignment:
Q  64 tttttaatttcatccctttgcactctttcgtttttcgttttggtccctgaat-ctagccactccccaactcttttgacacgtaacactccttttgccagg 162  Q
    |||||||||||||||||||||| | || || |||| ||||| ||| ||   | ||||||||||  || ||||||||| || ||| |   |||||||||      
T  35505799 tttttaatttcatccctttgcaattttgcgcttttggtttttgtctctcctttctagccactcatcatctcttttgaaacataagaaagcttttgccaac 35505700  T
Q  163 tcacagtaagccacgtgtgtctccgtctgccacctagccatttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaa-agcttacaagga 261  Q
    ||||| |   |||||| |||||||||||||||||    ||||||||||  ||||||||| |||| |||| | ||||||| |||     | ||||||||||    
T  35505699 tcacacttcaccacgtctgtctccgtctgccaccacaacatttttgtagcgggagttaacgggagggacgaattgcaaa-cgattggcaacttacaagga 35505601  T
Q  262 gagttttgaaacaaaaaa-gatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcgtatt 333  Q
       ||||||||||||||| |||||| |||||| || |||||| ||| ||||||||||||||| ||||| ||||    
T  35505600 tgattttgaaacaaaaaaagatacatggacgatttacaaaaacacgcgaaattacagggacgttttgcatatt 35505528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 341
Target Start/End: Complemental strand, 25264405 - 25264338
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcgtatttaagccta 341  Q
    ||||||||||||||||||||   |||||| |||  |||||||||||||| ||| | ||||||||||||    
T  25264405 aaaaaagatacaaggacgaaaaccaaaaacacgccaaattacagggacgatttacatatttaagccta 25264338  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 349
Target Start/End: Complemental strand, 24051285 - 24051245
Alignment:
Q  309 aaattacagggacggtttgcgtatttaagcctaaataaaat 349  Q
    |||||||||||||||||||| |||||||||||||| |||||    
T  24051285 aaattacagggacggtttgcatatttaagcctaaaaaaaat 24051245  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 269 - 340
Target Start/End: Original strand, 7678636 - 7678707
Alignment:
Q  269 gaaacaaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcgtatttaagcct 340  Q
    |||| ||||||||||||||||| ||  ||||||| |||  |||||||||||||| ||| | |||||||||||    
T  7678636 gaaaaaaaaaagatacaaggacaaaaagcaaaaacacgccaaattacagggacgatttacatatttaagcct 7678707  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 338
Target Start/End: Original strand, 2956229 - 2956293
Alignment:
Q  274 aaaaaagatacaaggacgaattgcaaaaatacgtgaaattacagggacggtttgcgtatttaagc 338  Q
    ||||||||||||||||||||   |||||| || | |||||||||||||| ||| | |||||||||    
T  2956229 aaaaaagatacaaggacgaaaaccaaaaacacatcaaattacagggacgatttacatatttaagc 2956293  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 349
Target Start/End: Original strand, 9699185 - 9699225
Alignment:
Q  309 aaattacagggacggtttgcgtatttaagcctaaataaaat 349  Q
    |||||||||||||||||||| ||||||| ||||||| ||||    
T  9699185 aaattacagggacggtttgcatatttaaacctaaattaaat 9699225  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 348
Target Start/End: Complemental strand, 31994823 - 31994675
Alignment:
Q  201 catttttgtaatgggagttaatgggaaggaccatttgcaaaacgaaaaaagcttacaaggagagttttgaa-acaaaaaagatacaaggacgaattgcaa 299  Q
    ||||||||||| ||| ||||| |||| |||| | |||||||  |  || | |||| |||||  |||||||| | |||||||||||| |||  ||||||||    
T  31994823 catttttgtaacgggtgttaacgggagggactaattgcaaatggttaacaacttataaggatggttttgaagaaaaaaaagatacagggaaaaattgcaa 31994724  T
Q  300 aaatacgtgaaattacagggacggtttgcgtatttaagcctaaataaaa 348  Q
    ||| ||| ||| ||||| | ||| ||||| |||||||||| || |||||    
T  31994723 aaacacgcgaacttacatgaacgttttgcatatttaagccaaattaaaa 31994675  T

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Target: scaffold0141 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 343
Target Start/End: Complemental strand, 10336 - 10302
Alignment:
Q  309 aaattacagggacggtttgcgtatttaagcctaaa 343  Q
    |||||||||||||||||||| ||||||||||||||    
T  10336 aaattacagggacggtttgcatatttaagcctaaa 10302  T

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