View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11873_low_13 (Length: 400)
Name: NF11873_low_13
Description: NF11873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11873_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 8 - 382
Target Start/End: Complemental strand, 46452936 - 46452562
Alignment:
| Q |
8 |
ctcaatacaaaactacttatatcatcaccagaccagacctagtcacatgtactagtttatcttgttttgttttggggaagacaataagagaataatattt |
107 |
Q |
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| T |
46452936 |
ctcaatacaaaactacttatatcatcaccagaccagacctagtcacatctactagtttatcttgttttgttttggggaagacaataagagtataatattt |
46452837 |
T |
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| Q |
108 |
atatttcgcctttagaactagctgctttgttgtataggattccaccttcatttgaggtaccgtaacactcccgttttaagtgctttctaccacatttgta |
207 |
Q |
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| T |
46452836 |
atatttcgcctttagaactagctgctttgttgtatagggttccaccttcatttgaggtaccgtaacactcccgttttaagtgctttctaccacatttgta |
46452737 |
T |
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| Q |
208 |
acatttgagatttagatcaactacattttggctctgattagtgcgctctgttgattcttctttaagaattgcaccaaacgcgtcaccaaactagagtatt |
307 |
Q |
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| T |
46452736 |
acatttgagatttagatcaactacattttggctctgattagtgcgctctgttgattcttctttaagaattgcaccaaacgcgtcaccaaactagagtatt |
46452637 |
T |
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| Q |
308 |
aactacattgttgtttttaatgttgatgatgagttcatcataggatctaataaactatgaagtagaagtttagca |
382 |
Q |
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| T |
46452636 |
aactacattgttgtttttaatgttgatgatgagttcatcataggatctaataaactatgaagtagaagtttagca |
46452562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 377
Target Start/End: Original strand, 8480149 - 8480213
Alignment:
| Q |
314 |
attgttgtttttaatgttgatgatgagttcatcata-ggatctaataaactatgaagtagaagtt |
377 |
Q |
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| T |
8480149 |
attgttgtttgtaatgttgatgatgagttgatcatatgaatcaggtaaactctgaagtagaagtt |
8480213 |
T |
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