View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11873_low_14 (Length: 353)
Name: NF11873_low_14
Description: NF11873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11873_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 20 - 343
Target Start/End: Complemental strand, 33864313 - 33863990
Alignment:
| Q |
20 |
agcaagaccctaaaaataataataacaataatatgtcatatgcattaactaattaagtaactgggttattaattataggaaaatgatgaaattgtgagtt |
119 |
Q |
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| T |
33864313 |
agcaaaaccctaaaaataataacaacaataatctgccatatgcattaactaattaagtaactgggttattaattataggaaaatgatgaaattgtgagtt |
33864214 |
T |
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| Q |
120 |
tcaatcatttattagagtaacaggggagttgcacgtataaagatgatttagagttaacaggggagttgtatgaaggactgaaggtactagctagctatac |
219 |
Q |
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| T |
33864213 |
tcaatcatttattagagtaacaggggagttgcacgtataaagatgatttagagttaacaggggagttgtatgaaggactgaaggtactagctagctatac |
33864114 |
T |
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| Q |
220 |
atgactcatcacacatgagtattttccagcaactatagaatatagtttacgtgtattaaatgctatagcatttttaagttacctcaccacatggcctcgt |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
33864113 |
atgactcatcacacatgagtattttccagcaactatagaatatagtttacgtgtattaaatgctatagcatttttaagtaacctcaccacatggcctcgt |
33864014 |
T |
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| Q |
320 |
cctcgcaggccaacaatatctctg |
343 |
Q |
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|||||||||||||||||||||||| |
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| T |
33864013 |
cctcgcaggccaacaatatctctg |
33863990 |
T |
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