View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11873_low_18 (Length: 229)
Name: NF11873_low_18
Description: NF11873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11873_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 123 - 223
Target Start/End: Original strand, 717439 - 717540
Alignment:
| Q |
123 |
cgaatataagagcaag-tacattcccttcaaaaatgaaagaagcaaggtacatatcgagccttgcattttatttaatcataactattctaatgatcaata |
221 |
Q |
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| T |
717439 |
cgaatataagagcaaggtacattcccttcaaaaatgaaagaagcaaggtacatatcgagccttgcattttatttaatcataactattccaatgatcaata |
717538 |
T |
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| Q |
222 |
aa |
223 |
Q |
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|| |
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| T |
717539 |
aa |
717540 |
T |
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Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 717361 - 717439
Alignment:
| Q |
1 |
caagggcatttgttaacatttccctatcttaaattatcgaatgagagtttatttaaccaaatcaaattatatcttattc |
79 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |
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| T |
717361 |
caagggcatttgttaacatttccctatcttaaattatcgaatgagagtttatttaaccaaatcaaatcatattttattc |
717439 |
T |
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