View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11873_low_2 (Length: 674)
Name: NF11873_low_2
Description: NF11873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11873_low_2 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 410; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 195 - 661
Target Start/End: Complemental strand, 1587735 - 1587269
Alignment:
| Q |
195 |
ttataacatcacctgattattgtcaagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttgagttttttaccctttttaaaactatttttg |
294 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1587735 |
ttataacatcacctggttattgtcaagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttgagttttttaccctttttaaaactatttttg |
1587636 |
T |
|
| Q |
295 |
ctcacaacagttttccaaccacgtagaagactgtaatacttgttagttcccatgctccacttcctcaaagacattctgaactctctaaaagaagggtcca |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
1587635 |
ctcacaacagttttccaaccacgtagaagactgtaatacttgttagttcccatgctccacttcctcaaagacattgtgaactctctaaaagaagggtcca |
1587536 |
T |
|
| Q |
395 |
acacgatcacttctaaaccaaccggtttatcactttcatccttttctatgtcggtgagaaaatcaactttgacttctttaagcggcattaaaagacgatt |
494 |
Q |
| |
|
|||| |||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1587535 |
acacagtcacttctaaaccatcctgtttattactttcatccttttctatgtcggtgagaaaatcaactttgacttctttaagcggcattaaaagacgatt |
1587436 |
T |
|
| Q |
495 |
ttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactctttgatcttgttctcaacgtgaataggc |
594 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1587435 |
ttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactctttgatcttgttctcaacgtgaataggc |
1587336 |
T |
|
| Q |
595 |
aatattggtggaggtgatgacaaatttttcttatcatgnnnnnnnggtttcatcttcttcgtggtct |
661 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||| |
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|
| T |
1587335 |
aatattggtggaggtgatgacaaattttccttatcatgtttttttggtttgatcttcttcgtggtct |
1587269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 361 - 661
Target Start/End: Original strand, 1590654 - 1590954
Alignment:
| Q |
361 |
aaagacattctgaactctctaaaagaagggtccaacacgatcacttctaaaccaaccggtttatcactttcatccttttctatgtcggtgagaaaatcaa |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
1590654 |
aaagacattctgaactctctaaaagaagggtccaacacaatcacttctaaaccaaccggtttatcactttcatccttttctatgtcggtgagaaaatcga |
1590753 |
T |
|
| Q |
461 |
ctttgacttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccatt |
560 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1590754 |
ctttgacttctttaagcggcattaaaagacgattttggtcatccctgagatccgacgcagacaattttttacacatgatatttttgatatcagtgccatt |
1590853 |
T |
|
| Q |
561 |
aaactctttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatcatgnnnnnnnggtttcatcttcttcgtggtc |
660 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||| |
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| T |
1590854 |
aaactctttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaattttccttatcatgtttttttggtttgatcttcttcgtggtc |
1590953 |
T |
|
| Q |
661 |
t |
661 |
Q |
| |
|
| |
|
|
| T |
1590954 |
t |
1590954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 77 - 171
Target Start/End: Complemental strand, 1588361 - 1588267
Alignment:
| Q |
77 |
gaccaacatgatcaaggagaataatctagtcacttaaggtgtcatagccaaatttttaaaagcaacatactataaaacattttgcaatgctaact |
171 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1588361 |
gaccaacatgatcaaggagaataatctagtcccttaaggtgtcagagtcaaatttttaaaagcaacatactataaaacattttgcaatgctaact |
1588267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 467 - 629
Target Start/End: Complemental strand, 1580963 - 1580801
Alignment:
| Q |
467 |
cttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactc |
566 |
Q |
| |
|
|||||||||| | ||||||||||||| |||||| | ||||||||||| || |||||| ||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
1580963 |
cttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcagtgccattcaactc |
1580864 |
T |
|
| Q |
567 |
tttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatc |
629 |
Q |
| |
|
|||||||||| |||| || | ||||||||||||||| |||||||||||||| |||| |||||| |
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|
| T |
1580863 |
tttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatc |
1580801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 467 - 629
Target Start/End: Original strand, 1603852 - 1604014
Alignment:
| Q |
467 |
cttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactc |
566 |
Q |
| |
|
|||||||||| | ||||||||||||| |||||| | ||||||||||| || |||||| ||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
1603852 |
cttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcagtgccattcaactc |
1603951 |
T |
|
| Q |
567 |
tttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatc |
629 |
Q |
| |
|
|||||||||| |||| || | ||||||||||||||| |||||||||||||| |||| |||||| |
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|
| T |
1603952 |
tttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatc |
1604014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 205 - 423
Target Start/End: Complemental strand, 1581243 - 1581034
Alignment:
| Q |
205 |
acctgattattgtcaagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttgagttttttaccctttttaaaactatttttgctcacaacag |
304 |
Q |
| |
|
|||| ||| ||||| |||| ||||||||||||| |||||||||||| ||||| ||||||||||||| ||| ||| ||||||||||| |||| |||| |
|
|
| T |
1581243 |
acctaatttttgtcgagtagaaagtgcaacttgctattgaccctaaatgtccaaatgttgagtttttgaccaatttcaaaactattttgcctcataacat |
1581144 |
T |
|
| Q |
305 |
ttttccaaccacgtagaagactgtaat-acttgttagttcccatgctccacttcctcaaagacattctgaactctctaaaagaagggtccaacacgatca |
403 |
Q |
| |
|
||||||| | ||| |||||||||| |||| | || ||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
1581143 |
gtttccaatcttgtacaagactgtaaagactttt----------gccccacttcctcaaagacattgtgaactctctaaaagaagggtccaacacaatca |
1581054 |
T |
|
| Q |
404 |
cttctaaaccaaccggttta |
423 |
Q |
| |
|
|||||| ||||||| ||||| |
|
|
| T |
1581053 |
cttctataccaaccagttta |
1581034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 205 - 423
Target Start/End: Original strand, 1603572 - 1603781
Alignment:
| Q |
205 |
acctgattattgtcaagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttgagttttttaccctttttaaaactatttttgctcacaacag |
304 |
Q |
| |
|
|||| ||| ||||| |||| ||||||||||||| |||||||||||| ||||| ||||||||||||| ||| ||| ||||||||||| |||| |||| |
|
|
| T |
1603572 |
acctaatttttgtcgagtagaaagtgcaacttgctattgaccctaaatgtccaaatgttgagtttttgaccaatttcaaaactattttgcctcataacat |
1603671 |
T |
|
| Q |
305 |
ttttccaaccacgtagaagactgtaat-acttgttagttcccatgctccacttcctcaaagacattctgaactctctaaaagaagggtccaacacgatca |
403 |
Q |
| |
|
||||||| | ||| |||||||||| |||| | || ||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
1603672 |
gtttccaatcttgtacaagactgtaaagactttt----------gccccacttcctcaaagacattgtgaactctctaaaagaagggtccaacacaatca |
1603761 |
T |
|
| Q |
404 |
cttctaaaccaaccggttta |
423 |
Q |
| |
|
|||||| ||||||| ||||| |
|
|
| T |
1603762 |
cttctataccaaccagttta |
1603781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 195 - 657
Target Start/End: Original strand, 19270050 - 19270533
Alignment:
| Q |
195 |
ttataacatcacctgattattgtcaagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttgagttttttaccctttttaaaactatttttg |
294 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
19270050 |
ttataacatcacctgattattgtcgagtacaaagtgcaacttgtcattgaccctaaaagtccagatgttaagttttttacccttttcaaaactatttttg |
19270149 |
T |
|
| Q |
295 |
ctcacaacagttttccaaccacgtagaagactgtaatacttgttagttcccatgctccacttcctcaaagacattctgaactctctaaaagaagggtcca |
394 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||||||| | |||||||||||||||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
19270150 |
ctcacaacagttttccaaccatgtacaagactgtaatacttgttaatgcccatgctccacttcctcaacgacattgtgaactctctaaaagaagggtcca |
19270249 |
T |
|
| Q |
395 |
acacgatcacttctaaaccaaccggtttatcactttcatcc---------------------ttttctatgtcggtgagaaaatcaactttgacttcttt |
473 |
Q |
| |
|
|||| ||||||||||||||||| ||||| | | |||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19270250 |
acacaatcacttctaaaccaactggtttgttattttcatcctttttagttaaagacacgtctttttctatgtcggtgagaaaatcaactttgacttcttt |
19270349 |
T |
|
| Q |
474 |
aagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactctttgatc |
573 |
Q |
| |
|
|| || |||||| ||||||||||||||||| |||||| ||| ||| |||||||||||| |||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
19270350 |
aatcgacattaatagacgattttggtcatctttgagatttgatgcaaacaattttttacccatgatatatttgatatcagtgccattcaactctttgatc |
19270449 |
T |
|
| Q |
574 |
ttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatcatgnnnnnnnggtttcatcttcttcgtg |
657 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||| ||||||||||||| |||||| || |||||||||||||||||| |
|
|
| T |
19270450 |
ttgttctctatgtgaataggcaatattggtggaggagatgacaaattttccttatcttgtttttttggtttcatcttcttcgtg |
19270533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 77 - 128
Target Start/End: Original strand, 19268280 - 19268331
Alignment:
| Q |
77 |
gaccaacatgatcaaggagaataatctagtcacttaaggtgtcatagccaaa |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
19268280 |
gaccaacatgatcaaggagaataatctagtcatttaaggtgtcatagtcaaa |
19268331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 378 - 629
Target Start/End: Original strand, 39615906 - 39616175
Alignment:
| Q |
378 |
tctaaaagaagggtccaacacgatcacttctaaaccaaccggtttatcactttcatccttttc----------------tatgtc--ggtgagaaaatca |
459 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||| | |||| |||||||||| || |
|
|
| T |
39615906 |
tctaaaataagggtccaacacaatcacttctaaaccaaccggtttatcgttttcatccttttcatctaaagtctccttttctgtcttggtgagaaaacca |
39616005 |
T |
|
| Q |
460 |
actttgacttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccat |
559 |
Q |
| |
|
| || | |||||||||| ||||||||||||||| ||||| | || || |||||||||| ||||||| || ||||||||| | ||||||||||||||| |
|
|
| T |
39616006 |
agttcgtcttctttaagtggcattaaaagacgactttggccttcatcgatatctgacgcaaacaatttctttgacatgatatatctgatatcagtgccat |
39616105 |
T |
|
| Q |
560 |
taaactctttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaatttttcttatc |
629 |
Q |
| |
|
| ||||| ||||||||||||| || | |||||| |||||||| |||||| | | ||||||||||||||| |
|
|
| T |
39616106 |
tcaactccttgatcttgttcttgacattaataggtaatattggcggaggtaaagccaaatttttcttatc |
39616175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 77 - 162
Target Start/End: Original strand, 39614942 - 39615029
Alignment:
| Q |
77 |
gaccaacatgatcaaggagaataatctag--tcacttaaggtgtcatagccaaatttttaaaagcaacatactataaaacattttgca |
162 |
Q |
| |
|
|||||||||||||||||| |||||| ||| |||| ||||||||||||| |||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
39614942 |
gaccaacatgatcaaggaaaataatgtagagtcacctaaggtgtcatagtcaaattgttaaaagcaacataatataaaacattttgca |
39615029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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