View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11873_low_3 (Length: 620)
Name: NF11873_low_3
Description: NF11873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11873_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-135; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 26 - 310
Target Start/End: Complemental strand, 4141548 - 4141264
Alignment:
| Q |
26 |
gcgacatagtcaaacaatttcaagggtgtttgtaccacaacttgcgcgcgtagaaactccacattgtaaaacaatttcaagggcaaaaaagacgaaatag |
125 |
Q |
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| T |
4141548 |
gcgacatagtcaaacaatttcaagggtgtttgtaccgcgacttgtgcgcgtagaaactccacattgtaaaacaatttcaagggcaaaaaagacgaaatag |
4141449 |
T |
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| Q |
126 |
aagaagagtcggaaatgtgggctttgagcaatttggggaagggttttaacaacttatctgtttgtttagtaagagcatcaagagtatgattatcatcatt |
225 |
Q |
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| T |
4141448 |
aagaagagtcggaaatgtgggctttgagcaatttggggaagggttttaacaacttgtctctttgtttagtaagagcatcaagagtatcattatcatcatt |
4141349 |
T |
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| Q |
226 |
ggtggtgacattttttatgagtaaatcctcaagaagtggacatacaaagagaatcttaataagatatttaagctttagaatatga |
310 |
Q |
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| T |
4141348 |
ggtggtgacattttttatgagcaaatcctcaagaagtggacatacagagagaatctgaataagatatttaagctttagaaaatga |
4141264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 322 - 612
Target Start/End: Complemental strand, 4140706 - 4140424
Alignment:
| Q |
322 |
atttgtgaggagggcaaatatgagaggatgtgatgaagtatttcatccggtaaatcgctgatactgtctgtaccttttcttgttggtgccattgatagtt |
421 |
Q |
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| T |
4140706 |
atttgtgaggagggcaaaaatgagaggatgtgatggagtatttcatccggtaaatcgctgatcctgtctgttccttttcttgttggtgccatggatagtt |
4140607 |
T |
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| Q |
422 |
aagtttctttctttattgattgaatgaaccaatgaatgaaagagaatatagtataatatgtgttac-ccttgtatttctgctccaatgatattgagcttt |
520 |
Q |
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| T |
4140606 |
aagtttctttctttgttgattgaatgaatcaatcaa-caaaaagacgatcgtacaaaatatgtcactctttgtattcctactccaatgatattaagctta |
4140508 |
T |
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| Q |
521 |
gcccagt-aaatcaattaattattagaaatatgtctgccttgcctgcatgatcaagaaaaatatttaaaaaatgtaatacacctttctctgct |
612 |
Q |
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| T |
4140507 |
gcccagtaaaattaattaattattagaaat---------ctgcctgcatgatcaagaaaaatatttataaaatgtaatacacctttctttgct |
4140424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 188; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 18 - 301
Target Start/End: Original strand, 3855067 - 3855350
Alignment:
| Q |
18 |
gtaccggcgcgacatagtcaaacaatttcaagggtgtttgtaccacaacttgcgcgcgtagaaactccacattgtaaaacaatttcaagggcaaaaaaga |
117 |
Q |
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|||| ||||||||||||| |||||||||||||||| || ||||| | ||||| |||||||||||||||||||||||||||||||||||||| |||||| | |
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| T |
3855067 |
gtactggcgcgacatagttaaacaatttcaagggttttcgtaccgctacttgtgcgcgtagaaactccacattgtaaaacaatttcaagggaaaaaaata |
3855166 |
T |
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| Q |
118 |
cgaaatagaagaagagtcggaaatgtgggctttgagcaatttggggaagggttttaacaacttatctgtttgtttagtaagagcatcaagagtatgatta |
217 |
Q |
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| T |
3855167 |
agaaatagaagaagagtcagaaatgtgggatttgagcaaattggggaagggttctaataactcgtctgtttgtttagcaagagcatcaagagtatcatta |
3855266 |
T |
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| Q |
218 |
tcatcattggtggtgacattttttatgagtaaatcctcaagaagtggacatacaaagagaatcttaataagatatttaagcttt |
301 |
Q |
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| T |
3855267 |
tcatcatgggtgctgacattttttatgagtaaatcctcgagaaatggacatacagagagaatcttaataagatatttaagcttt |
3855350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 233 - 310
Target Start/End: Complemental strand, 1882095 - 1882018
Alignment:
| Q |
233 |
acattttttatgagtaaatcctcaagaagtggacatacaaagagaatcttaataagatatttaagctttagaatatga |
310 |
Q |
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| T |
1882095 |
acatttttgatgagtaaatcctcaagaagcggacatacagagagaatcttaataagaaattgaagctttagaaaatga |
1882018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 233 - 310
Target Start/End: Complemental strand, 41541889 - 41541812
Alignment:
| Q |
233 |
acattttttatgagtaaatcctcaagaagtggacatacaaagagaatcttaataagatatttaagctttagaatatga |
310 |
Q |
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| T |
41541889 |
acatttttgatgagtaaatcctcaagaagcggacatacggagagaatcttaataagaaattgaagctttggaaaatga |
41541812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 41541991 - 41541943
Alignment:
| Q |
125 |
gaagaagagtcggaaatgtgggctttgagcaatttggggaagggtttta |
173 |
Q |
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| T |
41541991 |
gaagaagagtcagaaatgtgggctttgagcaaattggggaagggtttta |
41541943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 392
Target Start/End: Original strand, 44636883 - 44636942
Alignment:
| Q |
333 |
gggcaaatatgagaggatgtgatgaagtatttcatccggtaaatcgctgatactgtctgt |
392 |
Q |
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| T |
44636883 |
gggcaaatatgagaggatgtgatatattatttcatcgggtaaatcgctgatcctgtctgt |
44636942 |
T |
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