View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11873_low_7 (Length: 486)

Name: NF11873_low_7
Description: NF11873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11873_low_7
NF11873_low_7
[»] chr3 (14 HSPs)
chr3 (1-468)||(22434530-22434997)
chr3 (26-165)||(22440620-22440758)
chr3 (364-427)||(22429844-22429907)
chr3 (364-436)||(22366186-22366258)
chr3 (283-323)||(22429867-22429907)
chr3 (27-95)||(22633355-22633420)
chr3 (108-175)||(22465934-22466002)
chr3 (27-85)||(22628630-22628685)
chr3 (363-427)||(22633716-22633780)
chr3 (364-427)||(22352093-22352156)
chr3 (176-223)||(22429755-22429802)
chr3 (52-85)||(22448634-22448667)
chr3 (283-323)||(22366209-22366249)
chr3 (372-464)||(22441006-22441098)


Alignment Details
Target: chr3 (Bit Score: 409; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Original strand, 22434530 - 22434997
Alignment:
Q  1 aagcaatgctgatataatagtccacttgaatctgaaatccactgatgataaccatcacctgtagttcacaccaaattatcaatatgaaacacaatcatta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||    
T  22434530 aagcaatgctgatataatagtccacttgaatctgaaatccactgatgataactatcacctgtagttcacaccaaaatatcaatatgaaacacaatcatta 22434629  T
Q  101 caatgactagacagtttaatataagatgccattcaaaaaatagtttcatataaggattggaaaaattagcccttttaaaaattacataatgcttgtactt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22434630 caatgactagacagtttaatataagatgccattcaaaaaatagtttaatataaggattggaaaaattagcccttttaaaaattacataatgcttgtactt 22434729  T
Q  201 taatgactaagcagtaaatattacttcaannnnnnnnnctttcaaattggttagaaatttaagcataccattttttccactcgaagatccaatgctcttc 300  Q
    |||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22434730 taatgactaagcagtaaatattacttcaatttttttttctttcaaattggttagaaatttaagcataccattttttccactcgaagatccaatgcacttc 22434829  T
Q  301 tccttcatcaggaacaatgctctctagtatacgccccgcgctctatcaattgttgtaaaaaatatttctatagagggcacttgcttgaagatcaaatgct 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22434830 tccttcatcaggaacaatgctctctagtatacgccccgcgctctatcaattgttgtaaaaaatatttctatagagggcacttgcttgaagatcaaatgct 22434929  T
Q  401 tttctccttcatcaggatcaatgctctttacaagtttcttattcatatcaaaaagactgagaacatca 468  Q
    |||||||||||||||||||||||||| ||||||||||| | |||||||||| ||||||||||||||||    
T  22434930 tttctccttcatcaggatcaatgctccttacaagtttccttttcatatcaacaagactgagaacatca 22434997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 26 - 165
Target Start/End: Original strand, 22440620 - 22440758
Alignment:
Q  26 ttgaatctgaaatccactgatgataaccatcacctgtagttcacaccaaattatcaatatgaaacacaatcattacaatgactagacagtttaatataa- 124  Q
    |||||||| |||||||| |||||   |||||||||| ||||||  ||||||||||||||| |||||||||| |||||||||||  ||| ||||||||||     
T  22440620 ttgaatctcaaatccacagatga---ccatcacctgcagttcaatccaaattatcaatataaaacacaatcgttacaatgactgtacaatttaatataag 22440716  T
Q  125 gatgccattcaaaaaata-gtttcatataaggattggaaaaa 165  Q
    ||||||||| |||||| | | || ||||||||||||||||||    
T  22440717 gatgccattaaaaaaaaacgcttaatataaggattggaaaaa 22440758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 364 - 427
Target Start/End: Original strand, 22429844 - 22429907
Alignment:
Q  364 atttctatagagggcacttgcttgaagatcaaatgcttttctccttcatcaggatcaatgctct 427  Q
    ||||||| |||||||||||||||||||||| |||||| |||||||||||| ||| |||||||||    
T  22429844 atttctacagagggcacttgcttgaagatccaatgctcttctccttcatcgggaacaatgctct 22429907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 436
Target Start/End: Original strand, 22366186 - 22366258
Alignment:
Q  364 atttctatagagggcacttgcttgaagatcaaatgcttttctccttcatcaggatcaatgctctttacaagtt 436  Q
    ||||||| | |||||||||||||||||||| |||||| || ||||| ||||||| ||||||||| || |||||    
T  22366186 atttctacaaagggcacttgcttgaagatccaatgctcttttcctttatcaggagcaatgctctgtataagtt 22366258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 22429867 - 22429907
Alignment:
Q  283 gaagatccaatgctcttctccttcatcaggaacaatgctct 323  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  22429867 gaagatccaatgctcttctccttcatcgggaacaatgctct 22429907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 95
Target Start/End: Original strand, 22633355 - 22633420
Alignment:
Q  27 tgaatctgaaatccactgatgataaccatcacctgtagttcacaccaaattatcaatatgaaacacaat 95  Q
    ||||||| |||||||||||||    |||||||||| ||||||||||||||||| ||||| |||||||||    
T  22633355 tgaatctcaaatccactgatgg---ccatcacctgcagttcacaccaaattattaatataaaacacaat 22633420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 22465934 - 22466002
Alignment:
Q  108 tagacagtttaatataaga-tgccattca-aaaaatagtttcatataaggattggaaaaattagcccttt 175  Q
    |||||||||| |||||||| ||||||||| ||||||||||| |||||| |||||| ||||||||||||||    
T  22465934 tagacagtttcatataagaatgccattcagaaaaatagtttaatataatgattgg-aaaattagcccttt 22466002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 22628630 - 22628685
Alignment:
Q  27 tgaatctgaaatccactgatgataaccatcacctgtagttcacaccaaattatcaatat 85  Q
    ||||||| ||||||| ||||||   |||||||||| |||||||||||||||||||||||    
T  22628630 tgaatctcaaatccattgatga---ccatcacctgcagttcacaccaaattatcaatat 22628685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 427
Target Start/End: Original strand, 22633716 - 22633780
Alignment:
Q  363 tatttctatagagggcacttgcttgaagatcaaatgcttttctccttcatcaggatcaatgctct 427  Q
    |||||||| | |||||||||||||||| ||| |||||| || |||||||| |||| |||||||||    
T  22633716 tatttctacaaagggcacttgcttgaatatccaatgctcttttccttcattaggagcaatgctct 22633780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 364 - 427
Target Start/End: Original strand, 22352093 - 22352156
Alignment:
Q  364 atttctatagagggcacttgcttgaagatcaaatgcttttctccttcatcaggatcaatgctct 427  Q
    ||||||| |||||||||||| ||||||||| || | | || ||||||||||||| |||||||||    
T  22352093 atttctacagagggcacttggttgaagatccaacgttcttttccttcatcaggagcaatgctct 22352156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 176 - 223
Target Start/End: Original strand, 22429755 - 22429802
Alignment:
Q  176 taaaaattacataatgcttgtactttaatgactaagcagtaaatatta 223  Q
    |||||||||||||||||||||| ||| |||||||| || |||||||||    
T  22429755 taaaaattacataatgcttgtattttcatgactaaacaataaatatta 22429802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 85
Target Start/End: Original strand, 22448634 - 22448667
Alignment:
Q  52 ccatcacctgtagttcacaccaaattatcaatat 85  Q
    |||||||||| |||||||||||||||||||||||    
T  22448634 ccatcacctgcagttcacaccaaattatcaatat 22448667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 22366209 - 22366249
Alignment:
Q  283 gaagatccaatgctcttctccttcatcaggaacaatgctct 323  Q
    ||||||||||||||||| ||||| ||||||| |||||||||    
T  22366209 gaagatccaatgctcttttcctttatcaggagcaatgctct 22366249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 372 - 464
Target Start/End: Original strand, 22441006 - 22441098
Alignment:
Q  372 agagggcacttgcttgaagatcaaatgcttttctccttcatcaggatcaatgctctttacaagtttcttattcatatcaaaaagactgagaac 464  Q
    |||||||||||| ||||||||| |||||| || ||||||||||| | |||| |||| |  |||||  | | |||||||| ||||| |||||||    
T  22441006 agagggcacttggttgaagatccaatgctcttttccttcatcagaagcaatactctctttaagttcatcactcatatcataaagaatgagaac 22441098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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