View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11873_low_8 (Length: 462)

Name: NF11873_low_8
Description: NF11873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11873_low_8
NF11873_low_8
[»] chr3 (14 HSPs)
chr3 (1-452)||(55082478-55082946)
chr3 (1-231)||(38032163-38032412)
chr3 (1-231)||(38038429-38038677)
chr3 (1-231)||(38027336-38027585)
chr3 (41-231)||(50913418-50913626)
chr3 (1-227)||(38034937-38035181)
chr3 (9-231)||(38041830-38042070)
chr3 (12-231)||(50906835-50907073)
chr3 (279-375)||(38035286-38035382)
chr3 (225-375)||(50913649-50913797)
chr3 (290-368)||(38032518-38032596)
chr3 (290-368)||(38038783-38038861)
chr3 (290-366)||(38027691-38027767)
chr3 (225-265)||(38035208-38035248)
[»] chr8 (2 HSPs)
chr8 (1-231)||(21608138-21608387)
chr8 (290-368)||(21608493-21608571)
[»] chr2 (1 HSPs)
chr2 (20-94)||(3072268-3072342)
[»] chr4 (3 HSPs)
chr4 (107-204)||(27421973-27422070)
chr4 (99-203)||(27446144-27446248)
chr4 (104-204)||(27559278-27559378)


Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 1 - 452
Target Start/End: Complemental strand, 55082946 - 55082478
Alignment:
1 attctgttgtgaagaaataaaacaagaatgggtttccgcttacctggtattagaagatcatcatttagtgcaagtcaatcatctatcaaacaagtatatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
55082946 attctgttgtgaagaaataaaacaagaatgggtttccgcttacctggtattagaagatcatcatttagtgcaagtcaatcatctatcaaacaagtatatt 55082847  T
101 gctgtttatgttggagagaaaatgaagaggttcctgattccagtatcatttttgaatgagcctttatttcaagaattgcttagccaagcagaagaggagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
55082846 gctgtttatgttggagagaaaatgaagaggttcctgattccagtatcatttttgaatgagcctttatttcaagaattgcttagccaagcagaagaggagt 55082747  T
201 ttggttactgtcatccatgggtggtcttacatacaacttctcgcttgaacggtcaataattaattaattagtgataacatatagcacaataggattgact 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
55082746 ttggttactgtcatccatgggtggtcttacatacaacttctcgcttgaacggccaataattaattaattagtgataacatatagcacaataggattgact 55082647  T
301 agctgagacaacattcgtacatcaggaatttctttgtccattttgatctttcctcttaagtggaaatctga-----------------aatggaactata 383  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 |||| |||||||    
55082646 agttgagacaacattcgtacatcaggaatttctttgtccattttgatctttcctcttaagtggaaatctgaaatgagaacctaacttcaatgaaactata 55082547  T
384 ttcttttgaatctatctgttgttttttgcgtcgtcttagatgaccgtgtgatgaatcaaacgtcctatg 452  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
55082546 ttcttttgaatttatctgttgttttttgcgtcgtcttagatgaccgtgtgatgaatcaaacgtcctatg 55082478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 38032163 - 38032412
Alignment:
1 attctgttgtgaagaaataaaa-caagaatgggtttccgcttacctggtattagaagatcatcatttagtgcaagtcaatcatctatcaaacaag----- 94  Q
    ||||||||||||||||| |||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||         
38032163 attctgttgtgaagaaacaaaaacaagaatgggttttcgcttacctggtattagacgatcatcatttagtgcaagtcaatcatctatcaaacaagtggaa 38032262  T
95 ------------tatattgctgtttatgttggagagaaaatgaagaggttcctgattccagtatcatttttgaatgagcctttatttcaagaattgctta 182  Q
                ||| |||| || |||||||||||||||||||  |||||  |||||||||||||||| |||||||||||||||||||||||||||||||    
38032263 gttccaaaaggctatcttgcagtgtatgttggagagaaaatgagaaggtttatgattccagtatcattcttgaatgagcctttatttcaagaattgctta 38032362  T
183 gccaagcagaagaggagtttggttactgtcatcc-atgggtggtcttaca 231  Q
    ||||| | |||||||| || ||||| |||||||| ||||| |||||||||    
38032363 gccaatctgaagaggaattcggttattgtcatccaatgggcggtcttaca 38032412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 38038429 - 38038677
Alignment:
1 attctgttgtgaagaaataaaacaagaatgggtttccgcttacctggtattagaagatcatcatttagtgcaagtcaatcatctatcaaacaagt----- 95  Q
    ||||||||||||||||  |||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||         
38038429 attctgttgtgaagaagcaaaaaaagaatgggttttcgcttacctggtattagacgatcatcatttagtgcaagtcaatcatctagcaaacaagtggaag 38038528  T
96 ------------atattgctgtttatgttggagagaaaatgaagaggttcctgattccagtatcatttttgaatgagcctttatttcaagaattgcttag 183  Q
                || |||| || |||||||||||||||||||  |||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||    
38038529 tcccaaaaggccatcttgcagtgtatgttggagagaaaatgagaaggttcatgattccaatatcattcttgaatgagcctttatttcaagaattgcttag 38038628  T
184 ccaagcagaagaggagtttggttactgtcatcc-atgggtggtcttaca 231  Q
    |||||| |||||||| || ||||| |||||||| ||||| |||||||||    
38038629 ccaagctgaagaggaattcggttattgtcatccaatgggaggtcttaca 38038677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 38027336 - 38027585
Alignment:
1 attctgttgtgaagaaataaaa-caagaatgggtttccgcttacctggtattagaagatcatcatttagtgcaagtcaatcatctatcaaacaagt---- 95  Q
    ||||||||||||||||| |||| ||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||| |||||||||        
38027336 attctgttgtgaagaaacaaaaacaagaatgggttttcgcttacctgttattagaagatcatcacttagtgcaagtcaatcatctagcaaacaagtggaa 38027435  T
96 -------------atattgctgtttatgttggagagaaaatgaagaggttcctgattccagtatcatttttgaatgagcctttatttcaagaattgctta 182  Q
                 || |||| || |||||||||||||||||||  |||||  ||||||| |||||||| |||||||||||||||||||||||||||||||    
38027436 gttccaaaaggccatcttgcagtgtatgttggagagaaaatgagaaggtttatgattcccgtatcattcttgaatgagcctttatttcaagaattgctta 38027535  T
183 gccaagcagaagaggagtttggttactgtcatcc-atgggtggtcttaca 231  Q
    ||||| | |||||||| || ||||| |||||||| |||||||||||||||    
38027536 gccaatctgaagaggaattcggttattgtcatccaatgggtggtcttaca 38027585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 41 - 231
Target Start/End: Original strand, 50913418 - 50913626
Alignment:
41 tacctggtattagaagatcatcatttagtgcaagtcaatcatctatcaaacaagt-----------------atattgctgtttatgttggagagaaaat 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||                 || |||| || |||||||||||||||||    
50913418 tacctggtattagaagatcatcatttagtgcaagtcaatcatctagcaaagaagtggaagtcccaaaaggctatcttgcagtgtatgttggagagaaaat 50913517  T
124 gaagaggttcctgattccagtatcatttttgaatgagcctttatttcaagaattgcttagccaagcagaagaggagtttggttactgtcatcc-atgggt 222  Q
    |||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||||    
50913518 gaagaggttcttgattccaatatcattcttgaatgagcctttatttcaagaattgcttagccaagctgaagaggaatttggctactgtcatccaatgggt 50913617  T
223 ggtcttaca 231  Q
    |||||||||    
50913618 ggtcttaca 50913626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 38034937 - 38035181
Alignment:
1 attctgttgtgaagaaataaaacaagaatgggtttccgcttacctggtattagaagatcatcatttagtgcaagtcaatcatctatcaaacaagt----- 95  Q
    |||||||| |||||||  ||||||||||||||||| || ||||||| ||||||| |||||||||||||||||||||||||||||| |||||||||         
38034937 attctgttctgaagaagcaaaacaagaatgggttttcgtttacctgctattagacgatcatcatttagtgcaagtcaatcatctaacaaacaagtggaag 38035036  T
96 ------------atattgctgtttatgttggagagaaaatgaagaggttcctgattccagtatcatttttgaatgagcctttatttcaagaattgcttag 183  Q
                || |||| || ||||||||||||||||||   |||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||    
38035037 tcccaaaaggccatcttgcggtgtatgttggagagaaaatgcgaaggttcatgattccaatatcattcttgaatgagcctttatttcaagaattgcttag 38035136  T
184 ccaagcagaagaggagtttggttactgtcatcc-atgggtggtct 227  Q
    |||||| |||||||| || ||||| |||||||| |||||||||||    
38035137 ccaagctgaagaggaattcggttattgtcatccaatgggtggtct 38035181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 9 - 231
Target Start/End: Original strand, 38041830 - 38042070
Alignment:
9 gtgaagaaataaaacaagaatgggtttccgcttacctggtattagaagatcatcatttagtgcaagtcaatcatctatcaaacaagt------------- 95  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||| |||| |||| ||||| | ||||||| |                 
38041830 gtgaagaaacaaaacaagaatgggttttcgcttacctggtattagacgatcatcatttactgcaggtcagtcatccagcaaacaaatggaagtcccaaaa 38041929  T
96 ----atattgctgtttatgttggagagaaaatgaagaggttcctgattccagtatcatttttgaatgagcctttatttcaagaattgcttagccaagcag 191  Q
        || | || || |||||||||||| |||||||||||||| ||||||||||| |||| |||||||||||||| |||||||||||| | |||||||| |    
38041930 ggctatttagcggtgtatgttggagaggaaatgaagaggttcttgattccagtagcattcttgaatgagcctttgtttcaagaattgttgagccaagctg 38042029  T
192 aagaggagtttggttactgtcatc-catgggtggtcttaca 231  Q
    ||||||| || |||||||||||||  |||||||||||||||    
38042030 aagaggaattcggttactgtcatcaaatgggtggtcttaca 38042070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 12 - 231
Target Start/End: Complemental strand, 50907073 - 50906835
Alignment:
12 aagaaataaaacaagaatgggtttccgcttacctggtattagaagatcatcatttagtgcaagtcaatcatctatcaaacaag----------------- 94  Q
    |||||| ||||||||||||||||| ||||||||||||||||||   ||||||||||||||||||||||| |||| ||||||||                     
50907073 aagaaacaaaacaagaatgggttttcgcttacctggtattagacagtcatcatttagtgcaagtcaatcgtctagcaaacaagtggacgtcccaaaaggc 50906974  T
95 tatattgctgtttatgtt-ggaga-gaaaatgaagaggttcctgattccagtatcatttttgaatgagcctttatttcaagaattgcttagccaagcaga 192  Q
    ||| |||| || |||||| ||||| ||||||| |||||||  |||||||||| ||||| ||||||||||||| ||||||||||||| |  | ||||| ||    
50906973 tattttgcggtgtatgttaggagaggaaaatg-agaggtttttgattccagtgtcattcttgaatgagccttcatttcaagaattgttgcgtcaagccga 50906875  T
193 agaggagtttggttactgtcatcc-atgggtggtcttaca 231  Q
    |||||| ||  ||||||||||||| |||||||||||||||    
50906874 agaggaattccgttactgtcatccaatgggtggtcttaca 50906835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 279 - 375
Target Start/End: Original strand, 38035286 - 38035382
Alignment:
279 atatagcacaataggattgactagctgagacaacattcgtacatcaggaatttctttgtccattttgatctttcctcttaagtggaaatctgaaatg 375  Q
    |||||| |||||||||||||| |  ||||||||  || ||||||||| ||||| |||||| |||||||| ||||||||||||||||||||| |||||    
38035286 atataggacaataggattgaccaattgagacaatttttgtacatcagcaatttttttgtcaattttgatgtttcctcttaagtggaaatcttaaatg 38035382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 225 - 375
Target Start/End: Original strand, 50913649 - 50913797
Alignment:
225 tcttacatacaacttctcgcttgaacggtcaataattaattaattagtgataacatatagcacaataggattgactagctgagacaacattcgtacatca 324  Q
    ||||||||||| |||||| ||||||| | | |||||| ||  || ||||||||||||  | | | ||||| ||||||| ||||||||  || |||||||     
50913649 tcttacatacagcttctcacttgaacagactataattcatgtatgagtgataacata--ggatagtaggactgactagttgagacaagttttgtacatcg 50913746  T
325 ggaatttctttgtccattttgatctttcctcttaagtggaaatctgaaatg 375  Q
    | |||||||||||| ||||||||  |||||||||||||||||||| |||||    
50913747 gaaatttctttgtcaattttgatgcttcctcttaagtggaaatcttaaatg 50913797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 290 - 368
Target Start/End: Original strand, 38032518 - 38032596
Alignment:
290 taggattgactagctgagacaacattcgtacatcaggaatttctttgtccattttgatctttcctcttaagtggaaatc 368  Q
    |||||||||| || ||||||||  || ||||||||| |||||||||||| |||||||| |||||||||| |||||||||    
38032518 taggattgaccagttgagacaatttttgtacatcagaaatttctttgtcaattttgatgtttcctcttaggtggaaatc 38032596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 290 - 368
Target Start/End: Original strand, 38038783 - 38038861
Alignment:
290 taggattgactagctgagacaacattcgtacatcaggaatttctttgtccattttgatctttcctcttaagtggaaatc 368  Q
    |||||||||| || ||||||||  || ||||||||| || ||||||||| |||||||| ||||||||||||| ||||||    
38038783 taggattgaccagttgagacaatttttgtacatcagcaacttctttgtcaattttgatgtttcctcttaagttgaaatc 38038861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 290 - 366
Target Start/End: Original strand, 38027691 - 38027767
Alignment:
290 taggattgactagctgagacaacattcgtacatcaggaatttctttgtccattttgatctttcctcttaagtggaaa 366  Q
    |||||||||| || ||||| ||  |||||||||||| ||||||||| || |||||||| |||||||||| |||||||    
38027691 taggattgaccagttgagataattttcgtacatcagcaatttctttatcaattttgatgtttcctcttatgtggaaa 38027767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 225 - 265
Target Start/End: Original strand, 38035208 - 38035248
Alignment:
225 tcttacatacaacttctcgcttgaacggtcaataattaatt 265  Q
    ||||||||||| |||||| ||||||||||| ||||||||||    
38035208 tcttacatacagcttctctcttgaacggtctataattaatt 38035248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 21608138 - 21608387
Alignment:
1 attctgttgtgaagaaataaaa-caagaatgggtttccgcttacctggtattagaagatcatcatttagtgcaagtcaatcatctatcaaacaagt---- 95  Q
    ||||||||||||||||| |||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||        
21608138 attctgttgtgaagaaacaaaaacaagaatgggttttcgcttacctggtattagacgatcatcatttagtgcaagtcaatcatctatcaaacaagtggaa 21608237  T
96 -------------atattgctgtttatgttggagagaaaatgaagaggttcctgattccagtatcatttttgaatgagcctttatttcaagaattgctta 182  Q
                 || |||| || |||||||||||||||||||  |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||    
21608238 gttccaaaaggctatcttgcagtgtatgttggagagaaaatgagaaggttcatgattccaatatcattcttgaatgagcctttatttcaagaattgctta 21608337  T
183 gccaagcagaagaggagtttggttactgtcatcc-atgggtggtcttaca 231  Q
    ||||||| |||||||| || ||||| |||||||| ||||| |||||||||    
21608338 gccaagctgaagaggaattcggttattgtcatccaatgggaggtcttaca 21608387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 368
Target Start/End: Original strand, 21608493 - 21608571
Alignment:
290 taggattgactagctgagacaacattcgtacatcaggaatttctttgtccattttgatctttcctcttaagtggaaatc 368  Q
    |||||||||| || |||||||   || ||||||||| |||||||||||| |||||||| |||||||||| || ||||||    
21608493 taggattgaccagttgagacattttttgtacatcagtaatttctttgtcaattttgatgtttcctcttatgttgaaatc 21608571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 3072268 - 3072342
Alignment:
20 aaacaagaatgggtttccgcttacctggtattagaagatcatcatttagtgcaagtcaatcatctatcaaacaag 94  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
3072268 aaacaagaatgggttttcgcttacctggtattagacgatcatcatttagtgcaagtcaatcatctagcaaacaag 3072342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 204
Target Start/End: Complemental strand, 27422070 - 27421973
Alignment:
107 tatgttggagagaaaatgaagaggttcctgattccagtatcatttttgaatgagcctttatttcaagaattgcttagccaagcagaagaggagtttgg 204  Q
    ||||||||||| | ||||||  ||||| |||||||||||||||  |||||  | || |||||||||||||| || |  ||||||||||| || |||||    
27422070 tatgttggagatagaatgaaacggttcgtgattccagtatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttgg 27421973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 203
Target Start/End: Original strand, 27446144 - 27446248
Alignment:
99 ttgctgtttatgttggagagaaaatgaagaggttcctgattccagtatcatttttgaatgagcctttatttcaagaattgcttagccaagcagaagagga 198  Q
    |||| |||||||||||||| ||||||||| | ||  ||||||||   ||||| |||||| | |||| ||||||||| | | | |||||| ||||||| ||    
27446144 ttgcggtttatgttggagaaaaaatgaagcgatttgtgattccaacttcattattgaatcaaccttcatttcaagagtcgttaagccaatcagaagaaga 27446243  T
199 gtttg 203  Q
    |||||    
27446244 gtttg 27446248  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 104 - 204
Target Start/End: Complemental strand, 27559378 - 27559278
Alignment:
104 gtttatgttggagagaaaatgaagaggttcctgattccagtatcatttttgaatgagcctttatttcaagaattgcttagccaagcagaagaggagtttg 203  Q
    |||||||||||||| ||||||||||| || ||||||||  | ||||| |||||| |  ||| ||||||| | ||  | |||||| ||||||| |||||||    
27559378 gtttatgttggagacaaaatgaagagatttctgattcctatttcattattgaatcaatcttcatttcaatagttattaagccaatcagaagaagagtttg 27559279  T
204 g 204  Q
    |    
27559278 g 27559278  T

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