View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11873_low_9 (Length: 446)
Name: NF11873_low_9
Description: NF11873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11873_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 8 - 434
Target Start/End: Original strand, 52272202 - 52272628
Alignment:
| Q |
8 |
caaaggaagaaacatctaaaaacttacatatcatcatcaacaggagcagaatcaagtttcaagttcattgaaagcatagatggggcaaacacttcttcgg |
107 |
Q |
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| T |
52272202 |
caaaggaagaaacatctaaaaacttacatatcatcatcaacaggagcagaatcaagtttcaagttcattgaaagcatagatggggcaaacacttcttcgg |
52272301 |
T |
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| Q |
108 |
aaggcttattcaacttcccatttagggcctcttctttaatatcatttatttcagaatcagaaaagagatcctagaaatcaaagacaaataagcacttgat |
207 |
Q |
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| T |
52272302 |
aaggcttattcaacttcccatttagggcctcttctttaatatcatttatttcagaatcagaaaagagatcctagaaatcaaagacaaataagcacttggt |
52272401 |
T |
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| Q |
208 |
gaacaaaatctacatttttaagaaagcagctgaataaatgggtgacagaatacctgggtatcatcaacgggagctcgaaatgcatgtatagtttctgaaa |
307 |
Q |
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| T |
52272402 |
gaacaaaatctacatttttaagaaagcgtctgaataaatgggtgacagaatacctgggtatcatcaacgggagctcgaaatgcatgtatagtttctgaaa |
52272501 |
T |
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| Q |
308 |
ccacatcctgaaactcatcataagcaatgatttagatagcaatattaacatgatgaaaaccaacatctcccatgtaataaactaacacaaagatttcaag |
407 |
Q |
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| T |
52272502 |
ccacatcctgaaactcatcataagcaatgatttagatagcaatattaacatgatgaaaaccaacatctcccatgtaataaactaacacaaagatttcaag |
52272601 |
T |
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| Q |
408 |
ggcaaaaataaatcagttatatttgat |
434 |
Q |
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| T |
52272602 |
ggcaaaaataaatcagttatatttgat |
52272628 |
T |
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