View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11874_high_15 (Length: 431)
Name: NF11874_high_15
Description: NF11874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11874_high_15 |
 | |
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| [»] chr6 (3 HSPs) |
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| [»] scaffold0572 (1 HSPs) |
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| [»] scaffold0127 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 16 - 431
Target Start/End: Original strand, 20970521 - 20970936
Alignment:
| Q |
16 |
agatgtcacattaaccgaccaaaacaaatgcatattctaagctgacgaatataaatataaacaaagaacccataatttccatttgttcatttaaactaac |
115 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
20970521 |
agatgtcacattaaccggccaaaacaaatgcatattctaagctgacgaatataaatataaacaaagaacccagaatttccatttgttaatttaaactaac |
20970620 |
T |
|
| Q |
116 |
taagaaaattgataaaagaacaaacaggaccctgttaaagcaacaactaacataagggcacaataaaacacaacttataatatatacaattcttatagaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
20970621 |
aaagaaaattgataaaagaacaaacaggaccctgttaaagcaacaactaacataagggcacaataaaacaccacttataatatatacaattcttatagaa |
20970720 |
T |
|
| Q |
216 |
atgtaaagttcatacaagtccaatttatccattttgattttctcccatagattgtcatattcaacagcatctagtgcagaaccagattttgtgctatcat |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20970721 |
atgtaaagttcatacaagtccaatttatccattgtgattttctcccatagattgtcatattcaacagcatctagtgcagaaccagattttgtgctatcat |
20970820 |
T |
|
| Q |
316 |
tattttctgatctatcaaattttcgttcaccttctgagtttgatcctaaagcattattttctctatcaccatattttgtttcataacttgacatatcggt |
415 |
Q |
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|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20970821 |
tattttctgatctatcaaattttggttcaccttctgagtttgatcctaaagcattattttctctatcaccatattttgtttcataacttgacatatcggt |
20970920 |
T |
|
| Q |
416 |
atcaccatccctctga |
431 |
Q |
| |
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|||||||||||||||| |
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|
| T |
20970921 |
atcaccatccctctga |
20970936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 195 - 230
Target Start/End: Complemental strand, 15683909 - 15683874
Alignment:
| Q |
195 |
atatatacaattcttatagaaatgtaaagttcatac |
230 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
15683909 |
atatatacaattcttatagaaatgtaaagttcatac |
15683874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 345 - 377
Target Start/End: Complemental strand, 32598344 - 32598312
Alignment:
| Q |
345 |
ccttctgagtttgatcctaaagcattattttct |
377 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
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| T |
32598344 |
ccttctgagtttgatcctaaagcattgttttct |
32598312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0572 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: scaffold0572
Description:
Target: scaffold0572; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 16 - 431
Target Start/End: Original strand, 6371 - 6786
Alignment:
| Q |
16 |
agatgtcacattaaccgaccaaaacaaatgcatattctaagctgacgaatataaatataaacaaagaacccataatttccatttgttcatttaaactaac |
115 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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|
| T |
6371 |
agatgtcacattaaccggccaaaacaaatgcatattctaagctgacgaatataaatataaacaaagaacccagaatttccatttgttaatttaaactaac |
6470 |
T |
|
| Q |
116 |
taagaaaattgataaaagaacaaacaggaccctgttaaagcaacaactaacataagggcacaataaaacacaacttataatatatacaattcttatagaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
6471 |
taagaaaattgataaaagaacaaacaggaccctgttaaagcaacaactaacataagggcgcaataaaacaccacttataatatatacaattcttatagaa |
6570 |
T |
|
| Q |
216 |
atgtaaagttcatacaagtccaatttatccattttgattttctcccatagattgtcatattcaacagcatctagtgcagaaccagattttgtgctatcat |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6571 |
atgtaaagttcatacaagtccaatttatccattgtgattttctcccatagattgtcatattcaacagcatctagtgcagaaccagattttgtgctatcat |
6670 |
T |
|
| Q |
316 |
tattttctgatctatcaaattttcgttcaccttctgagtttgatcctaaagcattattttctctatcaccatattttgtttcataacttgacatatcggt |
415 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
6671 |
tattttctgatctatcaaattttcgttcaccttctgagtttgatcctaaagtattattttctctatcagcatattttgtttcataacttgacatatcggt |
6770 |
T |
|
| Q |
416 |
atcaccatccctctga |
431 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
6771 |
atcaccatccctctga |
6786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 16 - 431
Target Start/End: Complemental strand, 31221 - 30806
Alignment:
| Q |
16 |
agatgtcacattaaccgaccaaaacaaatgcatattctaagctgacgaatataaatataaacaaagaacccataatttccatttgttcatttaaactaac |
115 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
31221 |
agatgtcacattaaccggccaaaacaaatgcatattctaagctgacgaatataaatataaacaaagaacccagaatttccatttgttaatttaaactaac |
31122 |
T |
|
| Q |
116 |
taagaaaattgataaaagaacaaacaggaccctgttaaagcaacaactaacataagggcacaataaaacacaacttataatatatacaattcttatagaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
31121 |
taagaaaattgataaaagaacaaacaggaccctgttaaagcaacaactaacataagggcgcaataaaacaccacttataatatatacaattcttatagaa |
31022 |
T |
|
| Q |
216 |
atgtaaagttcatacaagtccaatttatccattttgattttctcccatagattgtcatattcaacagcatctagtgcagaaccagattttgtgctatcat |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31021 |
atgtaaagttcatacaagtccaatttatccattgtgattttctcccatagattgtcatattcaacagcatctagtgcagaaccagattttgtgctatcat |
30922 |
T |
|
| Q |
316 |
tattttctgatctatcaaattttcgttcaccttctgagtttgatcctaaagcattattttctctatcaccatattttgtttcataacttgacatatcggt |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
30921 |
tattttctgatctatcaaattttcgttcaccttctgagtttgatcctaaagtattattttctctatcagcatattttgtttcataacttgacatatcggt |
30822 |
T |
|
| Q |
416 |
atcaccatccctctga |
431 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
30821 |
atcaccatccctctga |
30806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 16 - 431
Target Start/End: Original strand, 41403114 - 41403529
Alignment:
| Q |
16 |
agatgtcacattaaccgaccaaaacaaatgcatattctaagctgacgaatataaatataaacaaagaacccataatttccatttgttcatttaaactaac |
115 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
41403114 |
agatgtcacattaaccggccaaaacaaatgcatattctaagctgacgaatataaatataaacaaagaacccagaatttccatttgttaatttaaactaac |
41403213 |
T |
|
| Q |
116 |
taagaaaattgataaaagaacaaacaggaccctgttaaagcaacaactaacataagggcacaataaaacacaacttataatatatacaattcttatagaa |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41403214 |
taagaaaattgataaaagaacaaacaggaccctgttaaagcaacaactaacataagggcgcaataaaacaccacttataatatatacaattcttatagaa |
41403313 |
T |
|
| Q |
216 |
atgtaaagttcatacaagtccaatttatccattttgattttctcccatagattgtcatattcaacagcatctagtgcagaaccagattttgtgctatcat |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41403314 |
atgtaaagttcatacaagtccaatttatccattgtgattttctcccatagattgtcatattcaacagcatctagtgcagaaccagattttgtgctatcat |
41403413 |
T |
|
| Q |
316 |
tattttctgatctatcaaattttcgttcaccttctgagtttgatcctaaagcattattttctctatcaccatattttgtttcataacttgacatatcggt |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41403414 |
tattttctgatctatcaaattttcgttcaccttctgagtttgatcctaaagtattattttctctatcagcatattttgtttcataacttgacatatcggt |
41403513 |
T |
|
| Q |
416 |
atcaccatccctctga |
431 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
41403514 |
atcaccatccctctga |
41403529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 386
Target Start/End: Complemental strand, 45202562 - 45202453
Alignment:
| Q |
277 |
caacagcatctagtgcagaaccagattttgtgctatcattattttctgatctatcaaattttcgttcaccttctgagtttgatcctaaagcattattttc |
376 |
Q |
| |
|
||||| |||||| ||| || |||||||||| ||||| ||| | ||||||||||| ||||| ||||||||||||||| ||||||||||||||| || |
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|
| T |
45202562 |
caacatcatctaatgccaaatcagattttgtactatcgttactgactgatctatcagatttttccccaccttctgagtttgctcctaaagcattattctc |
45202463 |
T |
|
| Q |
377 |
tctatcacca |
386 |
Q |
| |
|
| ||||||| |
|
|
| T |
45202462 |
accatcacca |
45202453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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