View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11874_high_2 (Length: 646)
Name: NF11874_high_2
Description: NF11874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11874_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 238 - 636
Target Start/End: Original strand, 33554983 - 33555381
Alignment:
| Q |
238 |
gtaccttgtaaaagtctacagcaatgtagttaggccatcggttaccagcatctttatagcaagtatgcatctttcgaatcaatggggatgagttatccct |
337 |
Q |
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| T |
33554983 |
gtaccttgtaaaagtctacagcaatgtagttaggccatcggttaccagcatctttatagcaagtatgcatctttcgaatcaatggggatgagttatcctt |
33555082 |
T |
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| Q |
338 |
acatgcttcattggaatttaggacatttctgtaatagttcattaggactagtgattttgttgttgtgttcattggatatgattctgctctatgtaaacaa |
437 |
Q |
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| T |
33555083 |
acatgcttcattggaatttaggacatttctgtaatagttcattaggactagtgattttgttgttgtgttcattggatatgattctgctctatgtaaacaa |
33555182 |
T |
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| Q |
438 |
tgacctcttcccattccatcatttccatctgcaatttcacaaagtcatcgaaattgtcatttacatttacggtatataatctgatcttagcagaaaataa |
537 |
Q |
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| T |
33555183 |
tgatctcttcccattccatcatttccatctgcaatttcacaaagtcattgaaattgtcatttacatttacggtatataatctgatcttagcagaaaataa |
33555282 |
T |
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| Q |
538 |
gaggaactcacatttattttccacaacatagttccattcataggcaatgcgttcagaagcctcttttgttgcatttgaagtgaacacaattaacctatg |
636 |
Q |
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| T |
33555283 |
gaggtactcacatttattttccacaacatagttccattcataggcaatgcgttcagaagcctcttttgttgcatttgaagtgaacacaattaacctatg |
33555381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 33554757 - 33554915
Alignment:
| Q |
19 |
acatcccatgtaaccnnnnnnncgacatgaaagtatagtttcatacattgcatatataaatttcgactgaactcacacaaacaaatttcgatttgcaaca |
118 |
Q |
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| T |
33554757 |
acatcccatgtaaccaaaaaaacgacatgaaagtatagtttcatacattgcatatataaat---gactgaactcacacaaacaaatttcgatttgcaaca |
33554853 |
T |
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| Q |
119 |
tctaatgcttctggagctcccccaccatcacctctctgaatgcacaatcaactgatccattc |
180 |
Q |
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| T |
33554854 |
tctaatgcttctggagctcccccaccatcacctctctgaatgcacaatcaactgatccattc |
33554915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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