View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11874_high_20 (Length: 408)

Name: NF11874_high_20
Description: NF11874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11874_high_20
NF11874_high_20
[»] scaffold0003 (4 HSPs)
scaffold0003 (4-393)||(88522-88898)
scaffold0003 (95-393)||(103905-104215)
scaffold0003 (268-390)||(108589-108709)
scaffold0003 (95-167)||(108818-108890)
[»] chr5 (28 HSPs)
chr5 (4-91)||(38010875-38010962)
chr5 (4-91)||(4954469-4954556)
chr5 (8-91)||(3263493-3263576)
chr5 (8-91)||(9594481-9594564)
chr5 (4-91)||(30574358-30574445)
chr5 (11-96)||(32634706-32634791)
chr5 (7-91)||(11464107-11464190)
chr5 (4-86)||(9596795-9596877)
chr5 (8-98)||(33823679-33823768)
chr5 (7-96)||(12401190-12401279)
chr5 (4-72)||(15622066-15622134)
chr5 (4-91)||(25345343-25345428)
chr5 (11-102)||(582855-582946)
chr5 (4-91)||(34381015-34381102)
chr5 (4-98)||(125088-125182)
chr5 (27-93)||(17489349-17489415)
chr5 (29-91)||(36624321-36624383)
chr5 (26-91)||(9599731-9599796)
chr5 (4-97)||(32379910-32380003)
chr5 (4-91)||(35814456-35814541)
chr5 (4-91)||(11880968-11881055)
chr5 (4-91)||(19271862-19271949)
chr5 (4-91)||(27340872-27340959)
chr5 (4-98)||(27271032-27271126)
chr5 (29-91)||(27440482-27440544)
chr5 (4-37)||(12512850-12512883)
chr5 (4-64)||(2863580-2863639)
chr5 (13-97)||(12417623-12417707)
[»] chr2 (26 HSPs)
chr2 (4-91)||(29893613-29893700)
chr2 (7-91)||(6884913-6884997)
chr2 (9-103)||(27307217-27307311)
chr2 (4-101)||(10687934-10688031)
chr2 (4-97)||(34144532-34144625)
chr2 (4-91)||(3196068-3196155)
chr2 (4-91)||(38246732-38246819)
chr2 (4-91)||(3091744-3091831)
chr2 (4-91)||(20974356-20974443)
chr2 (4-91)||(23048064-23048151)
chr2 (8-83)||(30487429-30487504)
chr2 (4-91)||(36383465-36383552)
chr2 (4-97)||(8352832-8352925)
chr2 (47-96)||(23391070-23391119)
chr2 (4-96)||(14140318-14140410)
chr2 (8-96)||(35171211-35171299)
chr2 (4-91)||(26321678-26321765)
chr2 (4-91)||(28165132-28165219)
chr2 (8-91)||(36909828-36909911)
chr2 (7-54)||(38795400-38795447)
chr2 (8-99)||(41353482-41353573)
chr2 (4-91)||(44484637-44484724)
chr2 (8-96)||(3299090-3299178)
chr2 (7-64)||(45372506-45372563)
chr2 (4-64)||(1277761-1277821)
chr2 (11-91)||(30192339-30192419)
[»] chr4 (31 HSPs)
chr4 (4-101)||(44368183-44368280)
chr4 (8-91)||(47105914-47105997)
chr4 (4-97)||(31221410-31221503)
chr4 (4-91)||(7037465-7037552)
chr4 (4-91)||(27001390-27001477)
chr4 (4-91)||(51377274-51377361)
chr4 (7-91)||(46480490-46480572)
chr4 (10-96)||(53384312-53384400)
chr4 (4-105)||(55267982-55268083)
chr4 (4-96)||(24235318-24235410)
chr4 (4-91)||(52669590-52669677)
chr4 (4-97)||(3222986-3223079)
chr4 (4-97)||(5208308-5208401)
chr4 (4-96)||(9162064-9162156)
chr4 (4-91)||(1796369-1796455)
chr4 (10-97)||(52487256-52487343)
chr4 (17-91)||(9032783-9032857)
chr4 (4-94)||(925043-925133)
chr4 (42-97)||(23094373-23094428)
chr4 (8-91)||(31240651-31240734)
chr4 (4-91)||(34116521-34116608)
chr4 (4-91)||(4100734-4100823)
chr4 (4-86)||(17805460-17805542)
chr4 (4-86)||(34537938-34538020)
chr4 (4-98)||(51318699-51318793)
chr4 (29-97)||(38864741-38864810)
chr4 (7-96)||(53662412-53662501)
chr4 (29-70)||(54771490-54771531)
chr4 (4-96)||(54800996-54801086)
chr4 (40-96)||(8026770-8026826)
chr4 (29-97)||(44272816-44272884)
[»] chr3 (37 HSPs)
chr3 (4-98)||(53473606-53473699)
chr3 (4-96)||(53102883-53102975)
chr3 (4-98)||(20714239-20714333)
chr3 (4-99)||(52454073-52454170)
chr3 (7-91)||(7039213-7039297)
chr3 (4-91)||(3957999-3958086)
chr3 (4-91)||(11327111-11327198)
chr3 (4-91)||(13159664-13159751)
chr3 (4-99)||(33007355-33007450)
chr3 (4-91)||(40419624-40419710)
chr3 (4-91)||(50879598-50879685)
chr3 (7-97)||(36818953-36819043)
chr3 (4-91)||(38944125-38944209)
chr3 (4-97)||(46344411-46344504)
chr3 (4-96)||(3069556-3069647)
chr3 (8-91)||(32931903-32931986)
chr3 (4-91)||(34021444-34021531)
chr3 (4-97)||(8254024-8254117)
chr3 (4-97)||(30400137-30400230)
chr3 (4-54)||(28263585-28263635)
chr3 (4-97)||(7195-7288)
chr3 (29-101)||(7867717-7867789)
chr3 (4-92)||(40558981-40559069)
chr3 (4-96)||(46473126-46473218)
chr3 (4-99)||(1901907-1902002)
chr3 (4-99)||(1911353-1911448)
chr3 (8-91)||(25806513-25806596)
chr3 (6-91)||(9582142-9582227)
chr3 (7-91)||(29705906-29705990)
chr3 (4-91)||(462382-462469)
chr3 (8-91)||(29525236-29525319)
chr3 (4-62)||(25142660-25142718)
chr3 (7-97)||(49196693-49196783)
chr3 (7-92)||(14207377-14207462)
chr3 (7-92)||(14215125-14215210)
chr3 (40-97)||(27198177-27198234)
chr3 (4-96)||(108429-108521)
[»] scaffold0514 (1 HSPs)
scaffold0514 (4-97)||(1477-1570)
[»] chr8 (31 HSPs)
chr8 (4-96)||(41273513-41273605)
chr8 (7-91)||(43186299-43186383)
chr8 (4-91)||(1065420-1065507)
chr8 (7-91)||(14228710-14228794)
chr8 (6-96)||(41293704-41293794)
chr8 (8-99)||(20288528-20288619)
chr8 (8-99)||(21075157-21075248)
chr8 (4-99)||(28927676-28927771)
chr8 (8-91)||(30927916-30927999)
chr8 (4-91)||(36064033-36064120)
chr8 (4-72)||(19723187-19723253)
chr8 (4-91)||(21648912-21648999)
chr8 (4-91)||(37562122-37562209)
chr8 (4-98)||(6004940-6005034)
chr8 (11-97)||(23952491-23952577)
chr8 (7-91)||(14029227-14029311)
chr8 (1-96)||(36593764-36593860)
chr8 (7-91)||(37568598-37568682)
chr8 (28-91)||(6806911-6806974)
chr8 (4-91)||(9985659-9985746)
chr8 (4-99)||(33817151-33817246)
chr8 (4-91)||(39259036-39259122)
chr8 (40-99)||(44711973-44712032)
chr8 (4-99)||(45101391-45101486)
chr8 (4-94)||(7129533-7129623)
chr8 (4-98)||(12045634-12045728)
chr8 (4-54)||(20895975-20896025)
chr8 (4-98)||(34473945-34474039)
chr8 (29-98)||(32725786-32725855)
chr8 (37-97)||(69605-69665)
chr8 (40-96)||(36497659-36497715)
[»] scaffold0011 (2 HSPs)
scaffold0011 (4-91)||(18598-18685)
scaffold0011 (4-97)||(219645-219738)
[»] chr7 (26 HSPs)
chr7 (4-91)||(27164818-27164905)
chr7 (4-97)||(30864398-30864491)
chr7 (4-91)||(33050186-33050273)
chr7 (10-91)||(35857500-35857581)
chr7 (7-91)||(37325803-37325887)
chr7 (4-91)||(42431726-42431813)
chr7 (4-91)||(19880212-19880299)
chr7 (8-91)||(29162264-29162347)
chr7 (4-90)||(43255548-43255634)
chr7 (4-92)||(1789993-1790081)
chr7 (7-91)||(2347043-2347127)
chr7 (27-98)||(37385237-37385308)
chr7 (8-91)||(44175548-44175631)
chr7 (4-98)||(18157166-18157260)
chr7 (46-91)||(49143494-49143539)
chr7 (4-96)||(4971288-4971380)
chr7 (4-96)||(32933546-32933637)
chr7 (4-96)||(44511137-44511229)
chr7 (7-98)||(116627-116718)
chr7 (4-91)||(7807058-7807145)
chr7 (4-91)||(19426583-19426670)
chr7 (4-91)||(29763833-29763920)
chr7 (29-91)||(21037240-21037302)
chr7 (4-66)||(38978520-38978582)
chr7 (26-91)||(27688956-27689021)
chr7 (11-91)||(30402163-30402243)
[»] chr1 (36 HSPs)
chr1 (4-91)||(25130706-25130793)
chr1 (4-91)||(25995463-25995550)
chr1 (8-91)||(27578185-27578268)
chr1 (4-100)||(3291406-3291502)
chr1 (4-91)||(13813561-13813648)
chr1 (4-98)||(42256456-42256550)
chr1 (7-96)||(29489343-29489432)
chr1 (4-96)||(26585154-26585246)
chr1 (4-96)||(36669351-36669443)
chr1 (4-96)||(6829766-6829856)
chr1 (8-97)||(41885718-41885807)
chr1 (4-91)||(7371929-7372016)
chr1 (4-91)||(22171497-22171584)
chr1 (4-91)||(50528038-50528125)
chr1 (29-99)||(18610768-18610838)
chr1 (1-91)||(32821638-32821728)
chr1 (8-97)||(9011642-9011731)
chr1 (4-96)||(11460789-11460884)
chr1 (4-97)||(27352627-27352720)
chr1 (7-91)||(43105108-43105192)
chr1 (4-91)||(15061848-15061935)
chr1 (4-91)||(18959007-18959094)
chr1 (4-91)||(36930735-36930821)
chr1 (8-91)||(45350080-45350163)
chr1 (4-91)||(50035519-50035605)
chr1 (4-70)||(19651434-19651500)
chr1 (37-91)||(32938862-32938916)
chr1 (4-97)||(7078481-7078574)
chr1 (4-96)||(11097865-11097957)
chr1 (4-96)||(23554749-23554841)
chr1 (11-91)||(26501298-26501378)
chr1 (4-76)||(27895741-27895813)
chr1 (7-91)||(35972788-35972872)
chr1 (43-91)||(38019524-38019572)
chr1 (7-91)||(40118699-40118783)
chr1 (7-91)||(50141919-50142003)
[»] chr6 (16 HSPs)
chr6 (7-91)||(17902676-17902760)
chr6 (7-91)||(2056786-2056870)
chr6 (4-99)||(27334853-27334948)
chr6 (4-99)||(27395593-27395688)
chr6 (4-97)||(3339480-3339573)
chr6 (40-96)||(1434681-1434737)
chr6 (4-99)||(32729884-32729979)
chr6 (42-91)||(8173331-8173380)
chr6 (4-97)||(15722484-15722577)
chr6 (4-97)||(26668493-26668586)
chr6 (4-91)||(32457233-32457320)
chr6 (29-91)||(10521129-10521191)
chr6 (4-97)||(237379-237472)
chr6 (6-91)||(9954551-9954636)
chr6 (4-96)||(19789057-19789149)
chr6 (29-89)||(21443693-21443753)
[»] scaffold0002 (1 HSPs)
scaffold0002 (4-91)||(147237-147324)
[»] scaffold0004 (1 HSPs)
scaffold0004 (7-91)||(249126-249210)
[»] scaffold0018 (1 HSPs)
scaffold0018 (11-97)||(35999-36085)
[»] scaffold0618 (1 HSPs)
scaffold0618 (4-97)||(3357-3450)
[»] scaffold0119 (2 HSPs)
scaffold0119 (4-97)||(2207-2300)
scaffold0119 (4-64)||(23270-23330)
[»] scaffold0174 (1 HSPs)
scaffold0174 (29-91)||(34799-34862)
[»] scaffold0060 (1 HSPs)
scaffold0060 (4-91)||(6820-6907)
[»] scaffold0522 (1 HSPs)
scaffold0522 (1-91)||(2482-2572)
[»] scaffold0036 (1 HSPs)
scaffold0036 (7-99)||(17999-18091)


Alignment Details
Target: scaffold0003 (Bit Score: 284; Significance: 1e-159; HSPs: 4)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 4 - 393
Target Start/End: Complemental strand, 88898 - 88522
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctttttgtta 103  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||| ||||| |||||    
T  88898 aaggaagagaaaggataagacaatcatgtaagaataagagagaaaattgtataaaagttatcacaaattggttgtacaaatatcatttctctttctgtta 88799  T
Q  104 ttatccttttcgatcaagaaaagttataaaattggtaaaataagaattacttattataattggtgtttttattttattttaacgtgacctctttactaag 203  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    |||| ||||||||||||||||||||||||    
T  88798 ttatccttttcgatcaagaaatgttataaaattggtaaaataagaattacttattataattggtgtt----tttttttttaacgtgacctctttactaag 88703  T
Q  204 tgcggtgaagagacaaacacaacacataattgttattttaatcataatannnnnnnacaagtctgggctcaaatctatataatgtatgtatgaagaatgt 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||      
T  88702 tgcggtgaagagacaaacacaacacataattgttattttaatcataatatttttttacaagtctgggctcaaatctatataatgtatgtatgaagaat-- 88605  T
Q  304 attataaattttaaattgataaaaacatacaatatttattacttgtaaaggggtgacaatatggttgaagttaccaagttagttaatgtt 393  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  88604 -------attttaaattgataaaaacatacaatatttattacttgtaaaggggtgacaatatggttgaagttaccaagttagttaatgtt 88522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 95 - 393
Target Start/End: Complemental strand, 104215 - 103905
Alignment:
Q  95 tttttgttattatccttttcgatcaagaaaagttataaaattggtaaaataagaattacttattataattggtgtttttattttattttaacgtgacctc 194  Q
    ||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||| ||||||      | ||| |||| | ||||||||    
T  104215 tttttattattatccttttcgatcatgaaatgttataaaattggtaaaataagaataacttattatgattggta-----agtttttttttatgtgacctc 104121  T
Q  195 tttactaagtgcggtgaagagacaaacacaacacat-----------------aattgttattttaatcataatannnnnnnacaagtctgggctcaaat 277  Q
    |||||||| |||  ||||||||||||||||||||||                 ||||||||||||||||||||||        |||||| | ||||||||    
T  104120 tttactaaatgctctgaagagacaaacacaacacatgtacttaagagtcacttaattgttattttaatcataatatatttttccaagtccgagctcaaat 104021  T
Q  278 ctatataatgtatgtatgaagaatgtattataaattttaaattgataaaaacatacaatatttattacttgtaaaggggtgacaatatggttgaagttac 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||    
T  104020 ctatataatgtatgtatgaagaatgtattataaattttaaattgataaaaacatacaatatttattacttgtaaaggggagaaaatatggttgaagttac 103921  T
Q  378 caagttagttaatgtt 393  Q
    ||||||||||||||||    
T  103920 caagttagttaatgtt 103905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 268 - 390
Target Start/End: Complemental strand, 108709 - 108589
Alignment:
Q  268 gggctcaaatctatataatgtatgtatgaagaatgtattataaattttaaattgataaaaacatacaatatttattacttgtaaaggggtgacaatatgg 367  Q
    ||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||  |||||||||||||||||||||||||||| || |||||||    
T  108709 gggctaaaatctatataatgtatgtatgaagatggtattataaattttaaattgataaa--catacaatatttattacttgtaaaggggagaaaatatgg 108612  T
Q  368 ttgaagttaccaagttagttaat 390  Q
    ||||||||||||| |||||||||    
T  108611 ttgaagttaccaaattagttaat 108589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 95 - 167
Target Start/End: Complemental strand, 108890 - 108818
Alignment:
Q  95 tttttgttattatccttttcgatcaagaaaagttataaaattggtaaaataagaattacttattataattggt 167  Q
    |||||||||||| ||||||| |||| |||| |||||||||||| |||||||||||| ||||||||| ||||||    
T  108890 tttttgttattacccttttctatcatgaaaggttataaaattgttaaaataagaataacttattatgattggt 108818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 38010962 - 38010875
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||||||||||| |||||||||| || ||||||||||||||| ||||||||||||||||| |||| |||||||||||||    
T  38010962 aaggaagagagaggataagaccatcatgtgagtatgagagagaaaattgtacaaaagttatcacaaattgattgtacaaatatcattt 38010875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 4954556 - 4954469
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||||||||||| ||||| |||| || ||||||||| ||||| | ||||| |||||||||||||| |||||||||||||    
T  4954556 aaggaagagagaggataagaccatcatatgagtatgagagagaaagttgtacataagttgtcacaaattaattgtacaaatatcattt 4954469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 3263493 - 3263576
Alignment:
Q  8 aagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||||||| |||||||||| || ||||| ||||||||| ||||||| |||||||||  ||| |||||||||||||    
T  3263493 aagagagaggataagaccatcatgtgagtatgagagaaaaaattgtacaaaagttgtcacaaattggttgtacaaatatcattt 3263576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 9594564 - 9594481
Alignment:
Q  8 aagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||||||| |||||||||| || ||||||||| ||||| ||||||| |||||||||  ||| |||||||||||||    
T  9594564 aagagagaggataagaccatcatgtgagtatgagagagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcattt 9594481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 30574358 - 30574445
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||||| |||||||| |||||||||| || ||||||||| ||||| ||||||| |||||||||  ||| |||||||||||||    
T  30574358 aaggaagagagatgataagaccatcatgtgagtatgagagagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcattt 30574445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 32634791 - 32634706
Alignment:
Q  11 agagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctt 96  Q
    |||||||||||||| |||||||||| || ||||||||| ||||| ||||||| ||||| ||| |||| ||||||||||||| ||||    
T  32634791 agagaggataagaccatcatgtgagtatgagagagaaagttgtacaaaagttgtcacagattgattgtacaaatatcatttctctt 32634706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 11464107 - 11464190
Alignment:
Q  7 gaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||| ||||||||| ||||||||| || ||| ||||||||||| |||||||||||||||||  ||| |||||||||||||    
T  11464107 gaagagagatgataagaca-tcatgtgagtatgagaaagaaaattgtacaaaagttatcacaaattggttgtacaaatatcattt 11464190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 9596795 - 9596877
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatat 86  Q
    ||||||||||||||||||||| |||||||||| || ||||| ||| ||||| ||||||| |||||||||  ||| ||||||||    
T  9596795 aaggaagagagaggataagaccatcatgtgagtatgagagacaaagttgtacaaaagttgtcacaaattggttgtacaaatat 9596877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 8 - 98
Target Start/End: Original strand, 33823679 - 33823768
Alignment:
Q  8 aagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctttt 98  Q
    ||||||||||||||||| |||||||||| ||||||||| || ||||| | ||||| |||||| ||  ||| ||||||||||||| ||||||    
T  33823679 aagagagaggataagaccatcatgtgagtataagagag-aagttgtacagaagttgtcacaagttggttgtacaaatatcatttctctttt 33823768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 12401279 - 12401190
Alignment:
Q  7 gaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctt 96  Q
    |||||||||  ||||||| || ||||||| || ||||||||| ||||| ||||||| | ||||||| |||| ||||||||||||| ||||    
T  12401279 gaagagagataataagaccataatgtgagtatgagagagaaagttgtaaaaaagttgttacaaattgattgtacaaatatcatttctctt 12401190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 15622134 - 15622066
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaatt 72  Q
    ||||||||||||||||||||| ||||| |||| || ||||||||| ||||| | ||||| |||||||||    
T  15622134 aaggaagagagaggataagaccatcatatgagtatgagagagaaagttgtacagaagttgtcacaaatt 15622066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 25345428 - 25345343
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||||| |||||||| |||||||||  || ||||| ||| || || |||| |||||| |||||||||| |||||||||||||    
T  25345428 aaggaagagagatgataagaccatcatgtga--atgagagataaagttatacaaaaattatcataaattaattgtacaaatatcattt 25345343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 582855 - 582946
Alignment:
Q  11 agagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctttttgtt 102  Q
    |||||| ||||||  || || |||| || |||||||||||||| |||||||||||||||| || ||| | ||||||||||| ||| ||||||    
T  582855 agagagaataagaatataatatgagtatgagagagaaaattgtttaaaagttatcacaaaatagttgtaaaaatatcatttctctatttgtt 582946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 34381102 - 34381015
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||| |||||| ||| ||||||| || ||||||||| ||||  ||||||| ||||||| |  ||| |||||||||||||    
T  34381102 aaggaagagagagaataagagaataatgtgagtatgagagagaaagttgtcaaaaagttgtcacaaagtggttgtacaaatatcattt 34381015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 125182 - 125088
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctttt 98  Q
    ||||||||||||| |||||| ||| ||||||| || ||| ||||| || |  ||||||| ||||||| || ||| ||||||||||||| ||||||    
T  125182 aaggaagagagagaataagagaataatgtgagtattagaaagaaagttatcaaaaagttgtcacaaagtagttgtacaaatatcatttctctttt 125088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 17489415 - 17489349
Alignment:
Q  27 tcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttat 93  Q
    ||||||||| || |||||||||||||| ||||| |||||| ||| || ||| |||||||||||||||    
T  17489415 tcatgtgagtatgagagagaaaattgtgtaaaaattatcaaaaaatagttgtacaaatatcatttat 17489349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 36624383 - 36624321
Alignment:
Q  29 atgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||| || |||||||||||||| |||||||||||||||| | | || |||||||||||||    
T  36624383 atgtgagtatgagagagaaaattgtctaaaagttatcacaaagtgaatgtacaaatatcattt 36624321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 9599731 - 9599796
Alignment:
Q  26 atcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||| || ||||||||| ||||| ||||||| |||||||||  ||| |||||||||||||    
T  9599731 atcatgtgagtatgagagagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcattt 9599796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 32379910 - 32380003
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttt 97  Q
    |||||||||||||||||| |  |||||||||| || ||||||||| ||||  ||||||| ||| ||| || ||| ||||||| ||||| |||||    
T  32379910 aaggaagagagaggataacaacatcatgtgagtatgagagagaaagttgttcaaaagttgtcataaactagttgtacaaataccatttctcttt 32380003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 35814541 - 35814456
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||||||||||| ||  |||||| || ||| ||||| |||||  |||||||||||||| |  ||| |||||||||||||    
T  35814541 aaggaagagagaggataagaccat--tgtgagtatgagaaagaaagttgtaccaaagttatcacaaaatggttgtacaaatatcattt 35814456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 11880968 - 11881055
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||||||  |||||  || ||||||| || ||||||||| |||| |||||||| | | ||| |||||| |||||||||||||    
T  11880968 aaggaagagagagagtaagaagataatgtgagtatgagagagaaagttgtctaaaagttgttaaaaaataattgtacaaatatcattt 11881055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 19271949 - 19271862
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||| |||||||||  |||||||||| || ||||||||| |||| |||| ||| | ||||| |  ||| |||||||||||||    
T  19271949 aaggaagagaaaggataagaacatcatgtgagtatgagagagaaagttgtctaaacgttgttacaaaatggttgtacaaatatcattt 19271862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 27340959 - 27340872
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||| ||||||  || ||||||| || ||||||||||||||  |||| |||| | ||| | |||| |||||||||||||    
T  27340959 aaggaagagagagaataagaatataatgtgagtatgagagagaaaattgtcaaaaaattataataaagtgattgtacaaatatcattt 27340872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 98
Target Start/End: Original strand, 27271032 - 27271126
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctttt 98  Q
    |||||||| ||||||||| || |||| ||||| |  ||||||||||||||| |||| || ||| |||||  ||  ||||||||||||| ||||||    
T  27271032 aaggaagaaagaggataaaactatcacgtgagtacgagagagaaaattgtacaaaaattgtcataaattggttttacaaatatcatttctctttt 27271126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 27440544 - 27440482
Alignment:
Q  29 atgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||| || ||||||||||||||  ||||||| ||||||| | |||| |||||||||||||    
T  27440544 atgtgagtatgagagagaaaattgttcaaaagttgtcacaaaatgattgtacaaatatcattt 27440482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 12512883 - 12512850
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaa 37  Q
    ||||||||||||||||||||| ||||||||||||    
T  12512883 aaggaagagagaggataagaccatcatgtgagaa 12512850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 2863639 - 2863580
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttat 64  Q
    |||||||| |||| |||||| ||| ||||||| ||| |||||||||||||| |||||||||    
T  2863639 aaggaagaaagagaataagaaaataatgtgagtata-gagagaaaattgtacaaaagttat 2863580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 12417707 - 12417623
Alignment:
Q  13 agaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttt 97  Q
    ||||||||| |  |||||||||| || | ||||||| ||||  |||||||  || |||||||||| ||||||||||||| |||||    
T  12417707 agaggataacaacatcatgtgagtatgaaagagaaagttgttcaaaagttgccataaattaattgtacaaatatcatttctcttt 12417623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 29893700 - 29893613
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||||||||||| |||||||||| |||||||||||| ||||| |||||||||||||||||| ||| |||||||||||||    
T  29893700 aaggaagagagaggataagaccatcatgtgagtataagagagaaagttgtacaaaagttatcacaaattagttgtacaaatatcattt 29893613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 6884997 - 6884913
Alignment:
Q  7 gaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||||||||||| |||||||||| || ||||||||| |||||||||||||||||||||||| ||| |||||||||||||    
T  6884997 gaagagagaggataagaccatcatgtgagtatgagagagaaagttgtataaaagttatcacaaattagttgtacaaatatcattt 6884913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 9 - 103
Target Start/End: Original strand, 27307217 - 27307311
Alignment:
Q  9 agagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctttttgtta 103  Q
    |||||||||||||||| |||||||||| || ||||||||| ||||| ||||||| ||||||||| |||| ||||||||||||| |||||||||||    
T  27307217 agagagaggataagaccatcatgtgagtatgagagagaaagttgtacaaaagttgtcacaaattgattgtacaaatatcatttctctttttgtta 27307311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 10688031 - 10687934
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctttttgt 101  Q
    |||||||||||| |||||||| |||||||||| || ||||||||| ||||||||||||| |||||||||  ||| ||||||||||||| ||| |||||    
T  10688031 aaggaagagagatgataagaccatcatgtgagtatgagagagaaagttgtataaaagttgtcacaaattgtttgtacaaatatcatttctctatttgt 10687934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 34144532 - 34144625
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttt 97  Q
    ||||||||||||||||||||| |||||||||| || ||||||||| ||||| |||| || |||||||||  ||| ||||||||||||| |||||    
T  34144532 aaggaagagagaggataagaccatcatgtgagtatgagagagaaagttgtacaaaaattgtcacaaattggttgtacaaatatcatttctcttt 34144625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 3196068 - 3196155
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||||| |||||||  |||||||||| || ||||||||| ||||| ||||||| ||||||||| |||| |||||||||||||    
T  3196068 aaggaagagagatgataagatcatcatgtgagtatgagagagaaagttgtacaaaagttgtcacaaattgattgtacaaatatcattt 3196155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 38246732 - 38246819
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||||||||||| ||||| |||| || ||||||||| || || |||| || ||||||||| |||| |||||||||||||    
T  38246732 aaggaagagagaggataagaccatcatatgagtatgagagagaaagttctacaaaaattgtcacaaattgattgtacaaatatcattt 38246819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 3091831 - 3091744
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||  |||| | ||| ||||||| || ||||||||||||||  ||||||||||||||| || ||| |||||||||||||    
T  3091831 aaggaagagagataataaaagaataatgtgagtatgagagagaaaattgtcaaaaagttatcacaaaatagttgtacaaatatcattt 3091744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 20974443 - 20974356
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||| ||||||||||  |||||| || || ||||||||| ||||| ||||||| |||||||||| ||| | |||||||||||    
T  20974443 aaggaagagaaaggataagaccttcatgtcagtatgagagagaaagttgtacaaaagttgtcacaaattagttgtaaaaatatcattt 20974356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 23048064 - 23048151
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||| |||||||||||||  ||||||||| || ||||||||| || || |||| ||||| |||||| |||| |||||||||||||    
T  23048064 aaggaagggagaggataagaccgtcatgtgagtatgagagagaaagttatacaaaaattatctcaaattgattgtacaaatatcattt 23048151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 83
Target Start/End: Original strand, 30487429 - 30487504
Alignment:
Q  8 aagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaa 83  Q
    ||||||||||||||||| |||||||||| || ||||| ||| ||||| ||||||| |||||||||| ||| |||||    
T  30487429 aagagagaggataagaccatcatgtgagtatgagagataaagttgtacaaaagttgtcacaaattagttgtacaaa 30487504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 36383552 - 36383465
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||||| |||||||  |||||||||| || ||||||||| ||||| ||||||| ||||||| |  ||| |||||||||||||    
T  36383552 aaggaagagagatgataagaacatcatgtgagtatgagagagaaagttgtacaaaagttgtcacaaaatctttgtacaaatatcattt 36383465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 8352925 - 8352832
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttt 97  Q
    |||||||||||||  |||||  || ||||||| || |||||||||||||| |||||||||| | ||| || ||| ||||||||||||| |||||    
T  8352925 aaggaagagagagagtaagaatataatgtgagtatgagagagaaaattgtctaaaagttattaaaaaatagttgtacaaatatcatttctcttt 8352832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 23391119 - 23391070
Alignment:
Q  47 aaattgtataaaagttatcacaaattaattgcacaaatatcatttatctt 96  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||| ||||    
T  23391119 aaattgtataaaaattatcacaaattaattgtacaaatatcatttctctt 23391070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 96
Target Start/End: Original strand, 14140318 - 14140410
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctt 96  Q
    |||| ||||| || ||||||  || |||||||||| ||||||| | ||||  ||||||| |||||||||| ||| ||||||||||||| ||||    
T  14140318 aaggtagagatagaataagagtataatgtgagaatgagagagatagttgtcaaaaagttgtcacaaattagttgtacaaatatcatttctctt 14140410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 35171211 - 35171299
Alignment:
Q  8 aagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctt 96  Q
    |||||||| |||||||| |||||||||| || ||||||||| |||||  ||| || ||||||| |  ||| ||||||||||||| ||||    
T  35171211 aagagagatgataagaccatcatgtgagtatgagagagaaagttgtaccaaaattgtcacaaaatggttgtacaaatatcatttctctt 35171299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 26321678 - 26321765
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||| ||||||  || ||||||| || | |||| |||||||  ||||||||||||||| |  ||| |||||||||||||    
T  26321678 aaggaagagagagaataagatgataatgtgagtatgatagaggaaattgtcaaaaagttatcacaaaatggttgtacaaatatcattt 26321765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 28165219 - 28165132
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||||||  |||||  || ||||||| || |||||||||||||| |||||||| ||||||| |  ||| |||| ||||||||    
T  28165219 aaggaagagagagattaagaatataatgtgagtatgagagagaaaattgtctaaaagttgtcacaaaatggttgtacaagtatcattt 28165132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 36909828 - 36909911
Alignment:
Q  8 aagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||| |||| ||||||||||| ||  |||||||| ||||  ||||||| ||||||| |  ||| |||||||||||||    
T  36909828 aagagagaggaaaagaaaatcatgtgagtatgtgagagaaagttgtccaaaagttgtcacaaaatggttgtacaaatatcattt 36909911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 38795447 - 38795400
Alignment:
Q  7 gaagagagaggataagacaatcatgtgagaataagagagaaaattgta 54  Q
    |||||||||||||||||| |||||||||| || ||||||||| |||||    
T  38795447 gaagagagaggataagaccatcatgtgagtatgagagagaaagttgta 38795400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 41353482 - 41353573
Alignment:
Q  8 aagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttttt 99  Q
    |||||| | |||||||  || ||||||| || ||||||||| ||||  |||| |||||| ||||| |||| ||||||||||||| |||||||    
T  41353482 aagagaaatgataagagtataatgtgagtatgagagagaaagttgttaaaaaattatcataaattgattgtacaaatatcatttctcttttt 41353573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 44484637 - 44484724
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||||| |||||||  |||||||||| || ||||||||| ||||| |||| || | ||||| |  ||| |||||||||||||    
T  44484637 aaggaagagagatgataagaacatcatgtgagtatgagagagaaagttgtacaaaaattgttacaaaatggttgtacaaatatcattt 44484724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 3299090 - 3299178
Alignment:
Q  8 aagagagaggataa-gacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctt 96  Q
    |||||||||||||| |||| ||||||||| |||||| ||||| |||| |||||||| ||| ||| |  ||| ||||||||||||| ||||    
T  3299090 aagagagaggataacgaca-tcatgtgagtataagaaagaaagttgtttaaaagttgtcataaaatggttgtacaaatatcatttctctt 3299178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 45372563 - 45372506
Alignment:
Q  7 gaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttat 64  Q
    ||||||||| ||||| |  |||||||||| |||||||||||||||||  |||||||||    
T  45372563 gaagagagatgataataacatcatgtgagtataagagagaaaattgttaaaaagttat 45372506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 1277821 - 1277761
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttat 64  Q
    ||||||||||||| |||| | ||| ||||||| || ||||||||  |||||||||||||||    
T  1277821 aaggaagagagagaataaaaaaataatgtgagtatgagagagaatgttgtataaaagttat 1277761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 30192339 - 30192419
Alignment:
Q  11 agagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||| |  |||||||||| || ||||||||||||||  |||| || | ||||| | |||| |||||||||||||    
T  30192339 agagaggataaaaatatcatgtgagtatgagagagaaaattgttcaaaaatttttacaaaatgattgaacaaatatcattt 30192419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 44368183 - 44368280
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctttttgt 101  Q
    |||||||||||| |||||||| |||||||||| |||||||||||| ||||| ||||||| ||||||||| |||| ||||||||||||| |||||||||    
T  44368183 aaggaagagagatgataagaccatcatgtgagtataagagagaaagttgtacaaaagttgtcacaaattgattgtacaaatatcatttctctttttgt 44368280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 47105997 - 47105914
Alignment:
Q  8 aagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||||||| |||||||| | || ||||||||| ||||| |||||||||||||||||||||| |||||||||||||    
T  47105997 aagagagaggataagaccatcatgtgtgtatgagagagaaagttgtacaaaagttatcacaaattaattgtacaaatatcattt 47105914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 31221503 - 31221410
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttt 97  Q
    ||||||||||||||||||||| || |||| || || ||||||||| ||||||||||||| ||||||||| |||| ||||||||||||| |||||    
T  31221503 aaggaagagagaggataagaccataatgtaagtatgagagagaaagttgtataaaagttgtcacaaattgattgtacaaatatcatttctcttt 31221410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 7037465 - 7037552
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||||| |||||||| |||| ||||| || ||||||||||||||| ||||||| |||||||||  ||| |||||||||||||    
T  7037465 aaggaagagagaagataagaccatcacgtgagtatgagagagaaaattgtacaaaagttgtcacaaattggttgtacaaatatcattt 7037552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 27001390 - 27001477
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||||||||||| |||||||||| || ||||||||| ||||| | ||||| |||||||||  ||| |||||||||||||    
T  27001390 aaggaagagagaggataagaccatcatgtgagtatgagagagaaagttgtacagaagttgtcacaaattggttgtacaaatatcattt 27001477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 51377274 - 51377361
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||||||||||| |||||||||| || ||||||||| ||| | ||||||| |||||||||  ||| |||||||||||||    
T  51377274 aaggaagagagaggataagaccatcatgtgagtatgagagagaaagttggacaaaagttgtcacaaattggttgtacaaatatcattt 51377361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 46480490 - 46480572
Alignment:
Q  7 gaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||||||||||| ||||| | ||  ||||||||||||||||| |||| ||| ||||||||||||| |||||||||||||    
T  46480490 gaagagagaggataagaccatcatataag--taagagagaaaattgtacaaaaattaccacaaattaattgtacaaatatcattt 46480572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 10 - 96
Target Start/End: Original strand, 53384312 - 53384400
Alignment:
Q  10 gagagaggataagacaatcatgtgaga--ataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctt 96  Q
    ||||||||||||||| ||| | |||||  |||||||||||||||||| ||||||||| ||||||| |||| ||||||||||||| ||||    
T  53384312 gagagaggataagaccatcgtatgagagtataagagagaaaattgtacaaaagttattacaaattgattgtacaaatatcatttctctt 53384400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 55267982 - 55268083
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctttttgtta 103  Q
    ||||||||||||||||||||  |||||||||| || ||||| ||| ||||| ||||||| |||||||||  ||| ||||||||||||| |||  ||||||    
T  55267982 aaggaagagagaggataagatcatcatgtgagtatgagagataaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctctagttgtta 55268081  T
Q  104 tt 105  Q
    ||    
T  55268082 tt 55268083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 24235410 - 24235318
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctt 96  Q
    |||||||||||||||||| || || ||||||| || ||||||||| ||||| |||| || ||||||||| |||| ||||||||||||| ||||    
T  24235410 aaggaagagagaggataaaaccattatgtgagtatgagagagaaagttgtacaaaaattgtcacaaattgattgtacaaatatcatttctctt 24235318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 52669590 - 52669677
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||| ||| |||||||| |||||||||  || ||||||||| ||||| |||||||||||||||||  ||| |||||||||||||    
T  52669590 aaggaagatagaagataagaccatcatgtgactatgagagagaaagttgtacaaaagttatcacaaattgtttgtacaaatatcattt 52669677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 3223079 - 3222986
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttt 97  Q
    |||||||||||| || ||  | |||||||||| || ||||||||| ||||| ||||||| ||||||||| |||| ||||||||||||| |||||    
T  3223079 aaggaagagagatgaaaaagccatcatgtgagtatgagagagaaagttgtacaaaagttgtcacaaattgattgtacaaatatcatttctcttt 3222986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 5208308 - 5208401
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttt 97  Q
    |||||||||||||||||| |  || ||||||| || ||||||||| ||||| ||||||| |||||||||  ||| ||||||||||||| |||||    
T  5208308 aaggaagagagaggataaaatcataatgtgagtatgagagagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctcttt 5208401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 9162156 - 9162064
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctt 96  Q
    ||||||||||||| |||||| ||| ||| ||| || ||||||||||||||  ||||||| ||||||| | |||| ||||||||||||| ||||    
T  9162156 aaggaagagagagaataagagaataatgcgagtattagagagaaaattgtcaaaaagttgtcacaaaatgattgtacaaatatcatttctctt 9162064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 1796455 - 1796369
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||||||||||| ||| ||||| ||  || ||||||||||||||| ||||||| |||||||||  ||| |||||||||||||    
T  1796455 aaggaagagagaggataaaaca-tcatgcgaccatgagagagaaaattgtacaaaagttgtcacaaattggttgtacaaatatcattt 1796369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 52487256 - 52487343
Alignment:
Q  10 gagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttt 97  Q
    |||||| |||||||| ||||| |||  || ||||||||| || || |||| ||||||||||||| ||| |||||||||||||||||||    
T  52487256 gagagaagataagaccatcatatgaatatgagagagaaagttatacaaaaattatcacaaattagttgtacaaatatcatttatcttt 52487343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 9032857 - 9032783
Alignment:
Q  17 gataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||| ||||||| || || ||||||||| ||||| ||||||| ||||||||| |||| |||||||||||||    
T  9032857 gataagaccatcatgtaagtatgagagagaaagttgtacaaaagttgtcacaaattgattgtacaaatatcattt 9032783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 925043 - 925133
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatc 94  Q
    |||||| ||||||||||| |   ||||||||| || |||||||||||||| |||||||| ||||||| |  ||| | ||||||||||||||    
T  925043 aaggaatagagaggataaaaatgtcatgtgagtatgagagagaaaattgtctaaaagttgtcacaaaatggttgtataaatatcatttatc 925133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 97
Target Start/End: Complemental strand, 23094428 - 23094373
Alignment:
Q  42 agagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttt 97  Q
    ||||||| |||| |||||||||||||||| | |||| ||||||||||||| |||||    
T  23094428 agagaaagttgtctaaaagttatcacaaaatgattgtacaaatatcatttctcttt 23094373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 31240734 - 31240651
Alignment:
Q  8 aagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||  |||||| ||| |||||||  | ||||||||| ||||| ||||||||||||||| |  ||| |||||||||||||    
T  31240734 aagagagataataagataataatgtgagtttgagagagaaagttgtaaaaaagttatcacaaagtggttgtacaaatatcattt 31240651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 34116521 - 34116608
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||| || ||||||  || ||||||| || ||||||||||||||  ||||||| ||||||| |  ||| |||||||||||||    
T  34116521 aaggaagagaaagaataagagtataatgtgagtatgagagagaaaattgtcaaaaagttgtcacaaagtggttgtacaaatatcattt 34116608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 4100734 - 4100823
Alignment:
Q  4 aaggaagagaga--ggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||  ||||||||  || ||||||| || ||||||||||||||| ||||| | ||||||| |  ||| |||||||||||||    
T  4100734 aaggaagagagatcggataagaacattatgtgagtatgagagagaaaattgtacaaaaggtgtcacaaaatggttgaacaaatatcattt 4100823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 17805542 - 17805460
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatat 86  Q
    ||||||||||||| |||||| ||| ||||||| || ||||||||||||||  |||| |||| | ||| || ||| ||||||||    
T  17805542 aaggaagagagagaataagaaaataatgtgagtatgagagagaaaattgtcaaaaaattattaaaaaatagttgtacaaatat 17805460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 34538020 - 34537938
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatat 86  Q
    ||||||||||||| |||| |  || ||||||| || ||||||||| ||||| |||||||||  |||||| |||| ||||||||    
T  34538020 aaggaagagagagaataaaaacataatgtgagtatgagagagaaagttgtacaaaagttatatcaaattgattgtacaaatat 34537938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 51318793 - 51318699
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctttt 98  Q
    ||||||||||||| |||| | ||| ||||||| || | |||  |||||||  ||||||||||||||| |  ||| ||||||||||||| ||||||    
T  51318793 aaggaagagagagaataatataataatgtgagtatgatagaagaaattgtcaaaaagttatcacaaagtggttgtacaaatatcatttctctttt 51318699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 38864741 - 38864810
Alignment:
Q  29 atgtgagaataagagagaaaattgt-ataaaagttatcacaaattaattgcacaaatatcatttatcttt 97  Q
    ||||||| || ||||||||| |||| | ||||||| ||||||| |||||| ||||||||||||| |||||    
T  38864741 atgtgagtatgagagagaaagttgtcaaaaaagttgtcacaaaataattgtacaaatatcatttctcttt 38864810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 53662412 - 53662501
Alignment:
Q  7 gaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctt 96  Q
    |||||||||| ||||||  |||||||||  || ||||||||| ||||| |||| || | ||||| || ||| ||||||||||||| ||||    
T  53662412 gaagagagagaataagaacatcatgtgaatatgagagagaaagttgtacaaaaattgttacaaaatagttgtacaaatatcatttctctt 53662501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 54771531 - 54771490
Alignment:
Q  29 atgtgagaataagagagaaaattgtataaaagttatcacaaa 70  Q
    ||||||| |||||||||||||||||  |||||||||||||||    
T  54771531 atgtgagtataagagagaaaattgttcaaaagttatcacaaa 54771490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 54801086 - 54800996
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctt 96  Q
    |||||||||||||  |||||  || ||||||| || | ||| |||||||| |||||||||||||||| |  ||| ||||||||||||| ||||    
T  54801086 aaggaagagagag--taagaatataatgtgagtatgaaagataaaattgtctaaaagttatcacaaagtggttgtacaaatatcatttctctt 54800996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 8026770 - 8026826
Alignment:
Q  40 agagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctt 96  Q
    ||||||||| ||||| ||||||| ||||||||| |||| | ||||||||||| ||||    
T  8026770 agagagaaagttgtacaaaagttgtcacaaattgattgtataaatatcatttctctt 8026826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 97
Target Start/End: Original strand, 44272816 - 44272884
Alignment:
Q  29 atgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttt 97  Q
    ||||||| || ||||||||| |||| |||||||| ||| ||| || ||| ||||||||||||| |||||    
T  44272816 atgtgagtatgagagagaaagttgtttaaaagttgtcaaaaaatagttgtacaaatatcatttctcttt 44272884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 53473699 - 53473606
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctttt 98  Q
    ||||||||||||| ||||||| ||||||||||||| ||||| ||| ||||| ||||||||||||||||| |||| ||||||||||||| ||||||    
T  53473699 aaggaagagagag-ataagaccatcatgtgagaatgagagaaaaagttgtacaaaagttatcacaaattgattgtacaaatatcatttctctttt 53473606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 4 - 96
Target Start/End: Original strand, 53102883 - 53102975
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctt 96  Q
    ||||||||||||| ||||||| |||||||||| || ||||||||| ||||||||||||| ||||||||| || | ||||||||||||| ||||    
T  53102883 aaggaagagagagaataagaccatcatgtgagtatgagagagaaagttgtataaaagttgtcacaaattgatcgtacaaatatcatttctctt 53102975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 20714333 - 20714239
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctttt 98  Q
    ||||||||||||||||||||| |||||||||| || ||||||||| ||||| | ||||| |||||||||  ||| ||||||||||||| ||||||    
T  20714333 aaggaagagagaggataagaccatcatgtgagtatgagagagaaagttgtacagaagttgtcacaaattggttgtacaaatatcatttctctttt 20714239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 52454073 - 52454170
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaata--agagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttttt 99  Q
    ||||||||||||||||||||| |||||||||| |||  ||||||||| ||| | ||||||| ||||||||| |||| ||||||||||||| |||||||    
T  52454073 aaggaagagagaggataagaccatcatgtgagtatatgagagagaaagttgaacaaaagttgtcacaaattgattgtacaaatatcatttctcttttt 52454170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 7039213 - 7039297
Alignment:
Q  7 gaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||||||||||| |||||||||| || ||||| ||| ||||| |||||||| |||||||| |||| |||||||||||||    
T  7039213 gaagagagaggataagaccatcatgtgagtatgagagataaagttgtacaaaagttaccacaaattgattgtacaaatatcattt 7039297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 3957999 - 3958086
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||||||||||| |||||||||| || ||||||||| ||| | | ||||| ||||||||| |||| |||||||||||||    
T  3957999 aaggaagagagaggataagaccatcatgtgagtatgagagagaaagttgcacagaagttgtcacaaattgattgtacaaatatcattt 3958086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 11327198 - 11327111
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||||||||||| |||||||||| || ||||||||| ||||| ||||||| ||||||| |  ||| |||||||||||||    
T  11327198 aaggaagagagaggataagaccatcatgtgagtatgagagagaaagttgtacaaaagttgtcacaaaatggttgtacaaatatcattt 11327111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 13159751 - 13159664
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||||| |||||||| ||||| |||| || ||||||||| ||||| ||||||| |||||||||||||| ||| |||||||||    
T  13159751 aaggaagagagacgataagaccatcatatgagtatgagagagaaagttgtacaaaagttgtcacaaattaattgtacagatatcattt 13159664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 33007450 - 33007355
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttttt 99  Q
    ||||||||||||| |||||| ||| ||||||| || ||||||||||||||  ||||||| | | ||||| |||| |||||||||||||||||||||    
T  33007450 aaggaagagagagaataagagaataatgtgagtatgagagagaaaattgtcaaaaagttgtgagaaattgattgtacaaatatcatttatcttttt 33007355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 40419624 - 40419710
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||||||||||||| ||||||||||  || |||||||||||||| ||||| |||||||||| | |||| |||||||||||||    
T  40419624 aaggaagagagaggataaga-aatcatgtgaatatgagagagaaaattgtctaaaaattatcacaaaatgattgtacaaatatcattt 40419710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 50879685 - 50879598
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||||| |||||||| |||||||||| || ||||||||| ||||| ||||||| |||||| ||| ||| |||||||||||||    
T  50879685 aaggaagagagaagataagaccatcatgtgagtatgagagagaaagttgtacaaaagttgtcacaatttagttgtacaaatatcattt 50879598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 36819043 - 36818953
Alignment:
Q  7 gaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttt 97  Q
    |||||||||||||||||| || ||||||| || ||||||||| ||||| ||||||| |||||||||  ||| ||||||||||||| |||||    
T  36819043 gaagagagaggataagaccatgatgtgagtatgagagagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctcttt 36818953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 38944125 - 38944209
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||| |||||||||||||   |||||||| || ||||||||||||||| ||||||| |||||||||| ||| |||||||||||||    
T  38944125 aaggaagggagaggataagac---catgtgagtatgagagagaaaattgtacaaaagttgtcacaaattagttgtacaaatatcattt 38944209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 46344504 - 46344411
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttt 97  Q
    ||||||||||||||||||||| ||||| |||  || ||||||||||||||| |||| || | |||||||| ||| ||||||||||||| |||||    
T  46344504 aaggaagagagaggataagaccatcatatgaatatgagagagaaaattgtacaaaaattgtaacaaattagttgtacaaatatcatttctcttt 46344411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 96
Target Start/End: Original strand, 3069556 - 3069647
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctt 96  Q
    ||||||||||||||||||||| |||||||||| || ||||||||| |||||  |||||| |||||||||  ||| ||||||||||||| ||||    
T  3069556 aaggaagagagaggataagaccatcatgtgagtatgagagagaaagttgta-caaagttgtcacaaattggttgtacaaatatcatttctctt 3069647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 32931903 - 32931986
Alignment:
Q  8 aagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||| |||||||||| |||||||||| || ||||||||| ||||| ||||||| |||||||||  ||| |||||||||||||    
T  32931903 aagagaaaggataagaccatcatgtgagtatgagagagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcattt 32931986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 34021444 - 34021531
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||||||||||| ||||||| || || ||| ||||| ||| | ||||||| ||||||||| |||| |||||||||||||    
T  34021444 aaggaagagagaggataagaccatcatgtaagtatgagaaagaaagttggacaaaagttgtcacaaattgattgtacaaatatcattt 34021531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 8254117 - 8254024
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttt 97  Q
    |||||||||||| |||||||| |||||||||| || ||||||||| |||||  |||||| ||||||| |  ||| ||||||||||||| |||||    
T  8254117 aaggaagagagatgataagaccatcatgtgagtatgagagagaaagttgtaccaaagttgtcacaaaatggttgtacaaatatcatttctcttt 8254024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 30400137 - 30400230
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttt 97  Q
    ||||||||||||||||||||| ||   ||||| || ||||||||| ||||| ||||||| |||||||||  ||| ||||||||||||| |||||    
T  30400137 aaggaagagagaggataagaccatggcgtgagtatgagagagaaagttgtacaaaagttgtcacaaatttgttgtacaaatatcatttctcttt 30400230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 28263635 - 28263585
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgta 54  Q
    ||||||||||||||||||||| |||||||||| || |||||||||||||||    
T  28263635 aaggaagagagaggataagaccatcatgtgagtatgagagagaaaattgta 28263585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 7195 - 7288
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttt 97  Q
    ||||||||||||||||||||  || ||||||| || ||||||||| ||||  ||||||| ||| ||| | |||| ||||||||||||| |||||    
T  7195 aaggaagagagaggataagaatataatgtgagtatgagagagaaagttgtccaaaagttgtcagaaaatgattgtacaaatatcatttctcttt 7288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 29 - 101
Target Start/End: Original strand, 7867717 - 7867789
Alignment:
Q  29 atgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctttttgt 101  Q
    ||||||| || ||| |||||||||| |||||||| ||||||| || ||| ||||||||||||| |||||||||    
T  7867717 atgtgagtatgagaaagaaaattgtttaaaagttgtcacaaaatagttgtacaaatatcatttctctttttgt 7867789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 40558981 - 40559069
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattta 92  Q
    |||||| ||||| |||||||| |||||||||| || || |||||| ||||| ||||||| |||||||||  ||  ||||||||||||||    
T  40558981 aaggaaaagagatgataagaccatcatgtgagtatgagggagaaagttgtacaaaagttgtcacaaattggttaaacaaatatcattta 40559069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 46473218 - 46473126
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctt 96  Q
    ||||||||||||| |||||| ||| ||||||| || ||||||||||||||  ||||||| || |||| |  ||| ||||||||||||| ||||    
T  46473218 aaggaagagagagaataagataataatgtgagtatgagagagaaaattgttaaaaagttgtcgcaaagtggttgtacaaatatcatttctctt 46473126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 1901907 - 1902002
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttttt 99  Q
    |||||||||||||  |||||  || ||||||| || ||||||||| |||| |||||||| ||||||| |  ||| ||||||||||||| |||||||    
T  1901907 aaggaagagagagagtaagaatataatgtgagtatgagagagaaagttgtctaaaagttgtcacaaagtggttgtacaaatatcatttctcttttt 1902002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 99
Target Start/End: Original strand, 1911353 - 1911448
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttttt 99  Q
    |||||||||||||  |||||  || ||||||| || ||||||||| |||| |||||||| ||||||| |  ||| ||||||||||||| |||||||    
T  1911353 aaggaagagagagagtaagaatataatgtgagtatgagagagaaagttgtctaaaagttgtcacaaagtggttgtacaaatatcatttctcttttt 1911448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 25806513 - 25806596
Alignment:
Q  8 aagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||| |||| |  || ||||||| |||||||||||| |||||||||||||||  |||| |||||  |||||||||||||    
T  25806513 aagagagagaataaaaacataatgtgagtataagagagaaagttgtataaaagttataccaaaataattatacaaatatcattt 25806596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 9582142 - 9582227
Alignment:
Q  6 ggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||||||| | |  |||||||||| || ||||||||| || ||||||| |||||| ||| |||||| | |||||||||||    
T  9582142 ggaagagagaggatgaaaatatcatgtgagtatcagagagaaatttatataaaaattatcataaagtaattgtataaatatcattt 9582227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 29705990 - 29705906
Alignment:
Q  7 gaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||| |||||| ||| ||||||| || | |||||||||| |  |||| |||||||||| |||||| | |||||||||||    
T  29705990 gaagagagagaataagagaataatgtgagtatgaaagagaaaattatcaaaaaattatcacaaaataattgtataaatatcattt 29705906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 462382 - 462469
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||| ||||||  || | ||||| || ||||||||| |||| |||||||| ||||||| |  ||| |||||||||||||    
T  462382 aaggaagagagagaataagaatataacgtgagtatgagagagaaagttgtctaaaagttgtcacaaaatggttgtacaaatatcattt 462469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 29525319 - 29525236
Alignment:
Q  8 aagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||||||  || ||||||| || |||||||| |||||| ||||||| ||| ||| | | || |||||||||||||    
T  29525319 aagagagaggataagaagataatgtgagtatgagagagaatattgtacaaaagttgtcataaaatgaatgtacaaatatcattt 29525236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 25142718 - 25142660
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagtt 62  Q
    |||||||||||||||||| |  |||||||||| |||||||| ||||||||  |||||||    
T  25142718 aaggaagagagaggataataacatcatgtgagtataagagataaaattgttaaaaagtt 25142660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 97
Target Start/End: Complemental strand, 49196783 - 49196693
Alignment:
Q  7 gaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttt 97  Q
    |||||||||| ||||||  || ||||||| || ||||||||||||||   |||||| ||||||| |  ||| ||||||||||||| |||||    
T  49196783 gaagagagagaataagagtataatgtgagtatgagagagaaaattgtcacaaagttgtcacaaaatggttgtacaaatatcatttctcttt 49196693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 14207462 - 14207377
Alignment:
Q  7 gaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattta 92  Q
    |||||||||| ||||||  || ||||||| || ||||||||| ||||  ||| ||||||||||| |  ||| ||||||||||||||    
T  14207462 gaagagagagaataagagtataatgtgagtatgagagagaaagttgtcaaaaggttatcacaaagtggttgtacaaatatcattta 14207377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 14215210 - 14215125
Alignment:
Q  7 gaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattta 92  Q
    |||||||||| ||||||  || ||||||| || ||||||||| ||||  ||| ||||||||||| |  ||| ||||||||||||||    
T  14215210 gaagagagagaataagagtataatgtgagtatgagagagaaagttgtcaaaaggttatcacaaagtggttgtacaaatatcattta 14215125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 97
Target Start/End: Original strand, 27198177 - 27198234
Alignment:
Q  40 agagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttt 97  Q
    ||||| |||||||| |||||||||||| ||| | |||| ||||||||||||| |||||    
T  27198177 agagataaaattgtttaaaagttatcaaaaaatgattgtacaaatatcatttctcttt 27198234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 108521 - 108429
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctt 96  Q
    ||||||||||||| ||||||  || ||||||| || ||||||||| ||||  |||| || ||||||| |  ||| ||||||||||||| ||||    
T  108521 aaggaagagagagaataagaggataatgtgagtatgagagagaaagttgtcaaaaaattgtcacaaagtggttgtacaaatatcatttctctt 108429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 1477 - 1570
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttt 97  Q
    ||||||||||||| ||||||| ||||||||||||| ||||||||||||||| ||||||| |||||||||  ||  ||||||||||||| |||||    
T  1477 aaggaagagagagaataagaccatcatgtgagaatgagagagaaaattgtacaaaagttgtcacaaattggttatacaaatatcatttctcttt 1570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 41273605 - 41273513
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctt 96  Q
    ||||||||||||||||||||| |||||||||| || ||||||||| ||||| ||||||| |||||||||  ||| ||||||||||||| ||||    
T  41273605 aaggaagagagaggataagaccatcatgtgagtatgagagagaaagttgtacaaaagttgtcacaaattgtttgtacaaatatcatttctctt 41273513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 43186383 - 43186299
Alignment:
Q  7 gaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||| |||||||||| |||||||||| || ||||||||| ||||| |||| |||||||||| |||||| |||||||||||||    
T  43186383 gaagagataggataagaccatcatgtgagtatgagagagaaagttgtacaaaaattatcacaaaataattgtacaaatatcattt 43186299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 1065507 - 1065420
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||||||||||| |||||||||| || ||||||||| ||||| | ||||| |||||||||  ||| |||||||||||||    
T  1065507 aaggaagagagaggataagaccatcatgtgagtatgagagagaaagttgtacagaagttgtcacaaattggttgtacaaatatcattt 1065420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 14228794 - 14228710
Alignment:
Q  7 gaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||| ||||||  |||||||||| || ||||||||| ||||| ||||||||||||||| || ||| |||||||||||||    
T  14228794 gaagagagagaataagaacatcatgtgagtatgagagagaaagttgtacaaaagttatcacaaaatagttgtacaaatatcattt 14228710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 41293704 - 41293794
Alignment:
Q  6 ggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctt 96  Q
    |||||||||| |||||||| |||||||||| || ||||||||| ||||| ||||||| |||||||||  ||| | ||||||||||| ||||    
T  41293704 ggaagagagaagataagaccatcatgtgagtatgagagagaaagttgtacaaaagttgtcacaaattggttgtaaaaatatcatttctctt 41293794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 20288619 - 20288528
Alignment:
Q  8 aagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttttt 99  Q
    |||||||||||||| || |||| ||||| || |||||||||  |||| ||||||| |||||||||  ||| ||||||||||||| |||||||    
T  20288619 aagagagaggataaaaccatcacgtgagtatgagagagaaagatgtacaaaagttgtcacaaattggttgtacaaatatcatttctcttttt 20288528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 99
Target Start/End: Complemental strand, 21075248 - 21075157
Alignment:
Q  8 aagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttttt 99  Q
    |||||||||||||| || |||| ||||| || |||||||||  |||| ||||||| |||||||||  ||| ||||||||||||| |||||||    
T  21075248 aagagagaggataaaaccatcacgtgagtatgagagagaaagatgtacaaaagttgtcacaaattggttgtacaaatatcatttctcttttt 21075157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 28927771 - 28927676
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttttt 99  Q
    ||||||||||||| |||||| ||| ||||||| || ||||| ||||||||  ||||||| ||||||| |  ||| ||||||||||||| |||||||    
T  28927771 aaggaagagagagaataagagaataatgtgagtatgagagaaaaaattgttaaaaagttgtcacaaagtggttgtacaaatatcatttctcttttt 28927676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 30927916 - 30927999
Alignment:
Q  8 aagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||||||| ||||| |||| || ||||||||| ||||| |||| || |||||||||  ||| |||||||||||||    
T  30927916 aagagagaggataagaccatcatatgagtatgagagagaaagttgtacaaaaattgtcacaaattggttgtacaaatatcattt 30927999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 36064120 - 36064033
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||||| |||||||   ||||||||| || ||||||||||||||  ||||||| ||||||| | |||| |||||||||||||    
T  36064120 aaggaagagagatgataagaatgtcatgtgagtatgagagagaaaattgtccaaaagttgtcacaaaatgattgtacaaatatcattt 36064033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 19723187 - 19723253
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaatt 72  Q
    ||||||||||||||||||||| ||||||||||  || |||||||| ||||| ||||||| |||||||||    
T  19723187 aaggaagagagaggataagaccatcatgtgag--tatgagagaaagttgtacaaaagttgtcacaaatt 19723253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 21648912 - 21648999
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||| ||||||  || ||||||| || ||||||||| ||||  ||||||| |||||||||  ||| |||||||||||||    
T  21648912 aaggaagagagagaataagaggataatgtgagtatgagagagaaagttgttaaaaagttgtcacaaattggttgtacaaatatcattt 21648999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 37562122 - 37562209
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||| ||||||  |||||| ||| || ||||||||| |||| |||||||| ||||| | || ||| |||||||||||||    
T  37562122 aaggaagagagagaataagaatatcatgcgagtatgagagagaaagttgtctaaaagttgtcacataatagttgtacaaatatcattt 37562209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 6005034 - 6004940
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctttt 98  Q
    |||||||||||||  |||||  || ||||||| || ||||||||| |||| ||||| || ||||||| || ||| ||||||||||||| ||||||    
T  6005034 aaggaagagagagagtaagaatataatgtgagtatgagagagaaagttgtctaaaaattgtcacaaagtagttgtacaaatatcatttctctttt 6004940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 23952577 - 23952491
Alignment:
Q  11 agagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttt 97  Q
    ||||| |||||||  | |||||||| || | | ||||||||||| |||||| |||||||| |||||| ||||||||||||| |||||    
T  23952577 agagaagataagaacaacatgtgagtatgaaaaagaaaattgtacaaaagtcatcacaaaataattgtacaaatatcatttctcttt 23952491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 14029227 - 14029311
Alignment:
Q  7 gaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||  ||||||  || ||||||| | |||||||||||||||  |||| |||||||||||| |||  |||||||||||||    
T  14029227 gaagagagataataagaggataatgtgagtaaaagagagaaaattgtcaaaaaattatcacaaattgattatacaaatatcattt 14029311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 36593764 - 36593860
Alignment:
Q  1 aagaaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaatt-aattgcacaaatatcatttatctt 96  Q
    |||||||||||||||| ||||||| ||||| |||  || | ||| |||||| |||||||||| |||||||||  |||| |||||||| |||| ||||    
T  36593764 aagaaggaagagagagaataagaccatcatatgaatatgatagaaaaaattatataaaagttgtcacaaattggattgtacaaatataatttctctt 36593860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 37568598 - 37568682
Alignment:
Q  7 gaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||||| || |||||||||| || | || |||| |||||||||| || ||||||| |  ||| |||||||||||||    
T  37568598 gaagagagaggataacaccatcatgtgagtatgaaagggaaagttgtataaaaattgtcacaaaatgtttgtacaaatatcattt 37568682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 6806974 - 6806911
Alignment:
Q  28 catgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||| || ||||| |||||||| |||||||| ||||||| | |||| |||||||||||||    
T  6806974 catgtgagtatgagagaaaaaattgtttaaaagttgtcacaaaatgattgtacaaatatcattt 6806911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 9985659 - 9985746
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||| ||||||  || ||||||| || ||||||||  ||||||||||||| ||| ||| ||  || |||||||||||||    
T  9985659 aaggaagagagagaataagaagataatgtgagtatgagagagaatgttgtataaaagttgtcataaaatagatgtacaaatatcattt 9985746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 33817246 - 33817151
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttttt 99  Q
    |||||| |||||||||||||| |||| | ||| || | | ||||| ||||| |||| || | ||||||| |||| ||||||||||||| |||||||    
T  33817246 aaggaaaagagaggataagacgatcacgagagtatgaaaaagaaagttgtacaaaaattgttacaaattgattgtacaaatatcatttctcttttt 33817151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 39259036 - 39259122
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||||| |||||||| ||||| | |  || ||||||||| || || |||| |||||||||||| |||| |||||||||||||    
T  39259036 aaggaagagagatgataagactatcatataaatatgagagagaaagttatacaaaa-ttatcacaaattgattgtacaaatatcattt 39259122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 44712032 - 44711973
Alignment:
Q  40 agagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttttt 99  Q
    ||||||||||||||  |||| |||| |||||||||||| | ||||||||||| |||||||    
T  44712032 agagagaaaattgtcaaaaaattattacaaattaattgtataaatatcatttctcttttt 44711973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 45101486 - 45101391
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttttt 99  Q
    ||||||||||| | ||||||  || ||||||| || ||||||||| ||||  ||||||| ||||||| |  ||| ||||||||||||| |||||||    
T  45101486 aaggaagagagggaataagaggataatgtgagtatgagagagaaagttgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctcttttt 45101391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 7129623 - 7129533
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatc 94  Q
    ||||||| ||||||| |||| ||||||||||| ||  |||||||| ||||  ||||||| ||||||| |  ||| |||||||| |||||||    
T  7129623 aaggaagggagaggaaaagaaaatcatgtgagtatgtgagagaaagttgtccaaaagttgtcacaaaatggttgtacaaatattatttatc 7129533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 98
Target Start/End: Original strand, 12045634 - 12045728
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctttt 98  Q
    |||||||||||||  |||||  || ||||||| || ||||||||| |||| |||||||| |||| || |  ||| ||||||||||||| ||||||    
T  12045634 aaggaagagagagagtaagaatataatgtgagtatgagagagaaagttgtctaaaagttgtcactaaatggttgtacaaatatcatttctctttt 12045728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 20895975 - 20896025
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgta 54  Q
    |||||| |||||||||||||| |||||||||| || ||||||||| |||||    
T  20895975 aaggaaaagagaggataagaccatcatgtgagtatgagagagaaagttgta 20896025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 34474039 - 34473945
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctttt 98  Q
    ||||||||||||| ||||||  || ||||||| || ||||||||||||||  |||  || ||||||| | | || ||||||||||||| ||||||    
T  34474039 aaggaagagagagaataagaggataatgtgagtatgagagagaaaattgtcaaaagattgtcacaaagtgaatgtacaaatatcatttctctttt 34473945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 32725786 - 32725855
Alignment:
Q  29 atgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctttt 98  Q
    ||||||| || ||||| |||||||| ||||| |||||||||| |  ||| ||||||||||||| ||||||    
T  32725786 atgtgagtatgagagaaaaaattgtctaaaaattatcacaaagtggttgtacaaatatcatttctctttt 32725855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 37 - 97
Target Start/End: Original strand, 69605 - 69665
Alignment:
Q  37 ataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttt 97  Q
    ||||||||| || |||| ||||| |||||||||| | |||| ||||||||||||| |||||    
T  69605 ataagagaggaagttgtctaaaaattatcacaaagtgattgtacaaatatcatttctcttt 69665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 36497715 - 36497659
Alignment:
Q  40 agagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctt 96  Q
    ||||||||| |||| |||||||| ||||||| || ||| ||||||||||||| ||||    
T  36497715 agagagaaagttgtctaaaagttgtcacaaaatagttgtacaaatatcatttctctt 36497659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 18685 - 18598
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||| ||||||| |||||||||| || ||||||||| ||||| |||||||||||||||||  ||| |||||||||||||    
T  18685 aaggaagagagagaataagaccatcatgtgagtatgagagagaaagttgtacaaaagttatcacaaattggttgtacaaatatcattt 18598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 219645 - 219738
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttt 97  Q
    ||||||||||||| ||||||  || ||||||  |||||| ||||| ||||  ||||||| ||||||| |  ||| ||||||||||||| |||||    
T  219645 aaggaagagagagaataagagtataatgtgaatataagaaagaaagttgtcaaaaagttgtcacaaagtggttgtacaaatatcatttctcttt 219738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 27164818 - 27164905
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||||||||||| |||||||||| || ||||||||| || || ||||||| ||||||||| |||| |||||||||||||    
T  27164818 aaggaagagagaggataagaccatcatgtgagtatgagagagaaagttatacaaaagttgtcacaaattgattgtacaaatatcattt 27164905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 30864398 - 30864491
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttt 97  Q
    ||||||||||||||||||||| ||||| |||| || ||||||||| ||||| ||||||| |||||||||  ||| ||||||||||||| |||||    
T  30864398 aaggaagagagaggataagaccatcatatgagtatgagagagaaagttgtacaaaagttgtcacaaattggttgtacaaatatcatttctcttt 30864491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 33050273 - 33050186
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||||||||||| |||||||||| || ||||||||| ||||| ||||||| ||||||| |  ||| |||||||||||||    
T  33050273 aaggaagagagaggataagaccatcatgtgagtatgagagagaaagttgtacaaaagttgtcacaaaatggttgtacaaatatcattt 33050186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 35857581 - 35857500
Alignment:
Q  10 gagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||||| |||||||||| || ||||| ||| ||||| |||| |||||| |||||||||| |||||||||||||    
T  35857581 gagagaggataagaccatcatgtgagtatgagagataaagttgtacaaaaattatcataaattaattgtacaaatatcattt 35857500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 37325803 - 37325887
Alignment:
Q  7 gaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||| ||||||||||| |||||||||| || | ||||||||||||| ||||||| |||||||||  ||| |||||||||||||    
T  37325803 gaagagtgaggataagactatcatgtgagtatgaaagagaaaattgtacaaaagttgtcacaaattggttgtacaaatatcattt 37325887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 42431813 - 42431726
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||||||||||  |||||||||| || | | ||||||||||| ||||||||||||||||||  || | |||||||||||    
T  42431813 aaggaagagagaggataagatcatcatgtgagtatgatatagaaaattgtacaaaagttatcacaaattaggtgtataaatatcattt 42431726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 19880212 - 19880299
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||||||||||| ||||| |||| || ||||| ||| ||||| ||||||| |||||||||  ||| ||||| |||||||    
T  19880212 aaggaagagagaggataagactatcatatgagtattagagataaagttgtacaaaagttgtcacaaattggttgtacaaacatcattt 19880299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 29162264 - 29162347
Alignment:
Q  8 aagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||||||  ||||| |||| || ||||||||| || || ||||||| ||||||||| |||| |||||||||||||    
T  29162264 aagagagaggataagatcatcatatgagtatgagagagaaagttatacaaaagttgtcacaaattgattgtacaaatatcattt 29162347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 43255548 - 43255634
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatt 90  Q
    |||||||||||| |||||||   ||||||||| || ||| ||||||||||| |||| || ||||||| |||||| ||||||||||||    
T  43255548 aaggaagagagatgataagaatgtcatgtgagtatgagaaagaaaattgtacaaaaattgtcacaaaataattgtacaaatatcatt 43255634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 1790081 - 1789993
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattta 92  Q
    ||||||||||||||| ||||  |||||||||| || ||||||||| ||||  ||||||| || |||| || ||| ||||||||||||||    
T  1790081 aaggaagagagaggaaaagaacatcatgtgagtatgagagagaaagttgtcaaaaagttgtcgcaaaatagttgtacaaatatcattta 1789993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 2347043 - 2347127
Alignment:
Q  7 gaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||||| || |||||||||| || ||||||||| |||||  |||||| ||||||| |  ||| |||||||||||||    
T  2347043 gaagagagaggataaaactatcatgtgagtatgagagagaaagttgtaccaaagttgtcacaaaatggttgtacaaatatcattt 2347127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 27 - 98
Target Start/End: Original strand, 37385237 - 37385308
Alignment:
Q  27 tcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctttt 98  Q
    ||||||||| || ||||||||| ||||| ||||||| ||| ||| || ||| ||||||||||||||||||||    
T  37385237 tcatgtgagtatgagagagaaagttgtacaaaagttgtcaaaaaatagttgtacaaatatcatttatctttt 37385308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 44175631 - 44175548
Alignment:
Q  8 aagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||| || || || |||||||||| || ||||||||| ||||| ||||||||||||||| | |||| |||||||| ||||    
T  44175631 aagagagatgaaaaaaccatcatgtgagtatgagagagaaagttgtacaaaagttatcacaaaatgattgtacaaatattattt 44175548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 98
Target Start/End: Original strand, 18157166 - 18157260
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctttt 98  Q
    |||||||||||||  |||||  || ||||||| || |||||||||||||| ||||| |||||||||| |  ||| ||||||||||| | ||||||    
T  18157166 aaggaagagagagagtaagaatataatgtgagtatgagagagaaaattgtctaaaaattatcacaaagtggttgtacaaatatcatgtctctttt 18157260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 49143539 - 49143494
Alignment:
Q  46 aaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||| || ||||||||||||||| ||||||||||||||||||||    
T  49143539 aaaattataaaaaagttatcacaaaataattgcacaaatatcattt 49143494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 4971380 - 4971288
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctt 96  Q
    ||||||||||||   |||||  || ||||||| || ||||||||| ||||||||||||| ||||||| |  ||| ||||||||||||| ||||    
T  4971380 aaggaagagagatagtaagaatataatgtgagtatgagagagaaagttgtataaaagttgtcacaaaatggttgtacaaatatcatttctctt 4971288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 32933637 - 32933546
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctt 96  Q
    |||||||| |||| |||||| ||| | ||||| || ||||||||||||||  |||| || ||||||| |||||| ||||||||||||| ||||    
T  32933637 aaggaagaaagagaataagagaataacgtgagtatgagagagaaaattgtcaaaaatttgtcacaaa-taattgtacaaatatcatttctctt 32933546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 44511229 - 44511137
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctt 96  Q
    ||||||||||||| ||||||  |||||||||| || | ||||||| ||||| ||||||| ||||||| |  ||| || |||||||||| ||||    
T  44511229 aaggaagagagagaataagaacatcatgtgagtatgaaagagaaagttgtacaaaagttgtcacaaaatggttgtacgaatatcatttctctt 44511137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 116718 - 116627
Alignment:
Q  7 gaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctttt 98  Q
    ||||||| | |||||||| |||||||||| || ||||||||| |||||  ||||||  |||||| || ||| | ||||||||||| ||||||    
T  116718 gaagagaaaagataagaccatcatgtgagtatgagagagaaagttgtaccaaagttggcacaaaatagttgtataaatatcatttctctttt 116627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 7807145 - 7807058
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||| |||||| ||| ||||||| || ||||| ||| ||||| |||| |||||||||| |   || |||||||||||||    
T  7807145 aaggaagagagagaataagagaataatgtgagtatgagagaaaaagttgtaaaaaatttatcacaaaatgggtgtacaaatatcattt 7807058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 19426670 - 19426583
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||| ||||||  || ||||||| || ||||||||| ||||  ||||||| ||||||| |  ||| |||||||||||||    
T  19426670 aaggaagagagagaataagaggataatgtgagtatgagagagaaagttgtcaaaaagttgtcacaaaatggttgtacaaatatcattt 19426583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 29763920 - 29763833
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||||||||| | |  ||||| |||| || ||| ||||| ||||| ||||||||||||||| |  ||| |||||||||||||    
T  29763920 aaggaagagagaggatgaaaacatcatatgagtatgagaaagaaagttgtacaaaagttatcacaaaatggttgtacaaatatcattt 29763833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 21037240 - 21037302
Alignment:
Q  29 atgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||| |||||||||||| ||||  ||||||| | | |||||||||| |||||||||||||    
T  21037240 atgtgagtataagagagaaagttgtcaaaaagttgttagaaattaattgtacaaatatcattt 21037302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 66
Target Start/End: Complemental strand, 38978582 - 38978520
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatca 66  Q
    ||||||||||||||||||| | |||||||||  || | ||||||| ||||| |||||||||||    
T  38978582 aaggaagagagaggataagtccatcatgtgaatatgaaagagaaagttgtacaaaagttatca 38978520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 27688956 - 27689021
Alignment:
Q  26 atcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||| |||||||| |||||||| || ||||| || |||| |||||| | |||||||||||    
T  27688956 atcatgtgagtataagagataaaattgtttacaagttgtcgcaaaataattgtataaatatcattt 27689021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 30402163 - 30402243
Alignment:
Q  11 agagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||||||| ||||| |||| || ||||||||| || || ||||||||||| ||| | | |  |||||||||||||    
T  30402163 agagaggataagactatcatatgagtatgagagagaaagttatacaaaagttatcaaaaaatgactatacaaatatcattt 30402243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 25130793 - 25130706
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||||||||||  |||||||||| || ||||||||| ||||| ||||||| ||||||||| |||| |||||||||||||    
T  25130793 aaggaagagagaggataagatcatcatgtgagtatgagagagaaagttgtacaaaagttgtcacaaattgattgtacaaatatcattt 25130706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 25995550 - 25995463
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||||||||||| |||||||||| || ||||||||| ||||| |||| || ||||||||| |||| |||||||||||||    
T  25995550 aaggaagagagaggataagaccatcatgtgagtatgagagagaaagttgtacaaaacttgtcacaaattgattgtacaaatatcattt 25995463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 27578268 - 27578185
Alignment:
Q  8 aagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||||||| ||||||| || |||||||||||| ||||| ||||||| || ||||||||||| |||||||||||||    
T  27578268 aagagagaggataagaccatcatgtaagtataagagagaaagttgtacaaaagttgtcccaaattaattgtacaaatatcattt 27578185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 4 - 100
Target Start/End: Original strand, 3291406 - 3291502
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctttttg 100  Q
    |||||||||||| |||||||| |||||||||| || | ||||||||||||| ||||||| | |||||||||||| || |||||||||| ||| ||||    
T  3291406 aaggaagagagatgataagaccatcatgtgagtatgaaagagaaaattgtacaaaagttgtaacaaattaattgtacgaatatcatttctctatttg 3291502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 13813648 - 13813561
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||||||||||| |||||||||| || ||||||||| ||||| | ||||| |||||||||  ||| |||||||||||||    
T  13813648 aaggaagagagaggataagaccatcatgtgagtatgagagagaaagttgtacagaagttgtcacaaattggttgtacaaatatcattt 13813561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 42256550 - 42256456
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctttt 98  Q
    ||||||||||||||||||||| |||||||||| || ||||||||| |||||  |||||| ||||||| |  ||| ||||||||||||| ||||||    
T  42256550 aaggaagagagaggataagaccatcatgtgagtatgagagagaaagttgtaccaaagttgtcacaaaatggttgtacaaatatcatttctctttt 42256456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 29489343 - 29489432
Alignment:
Q  7 gaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctt 96  Q
    |||||||||||||||||| |||||||||| || ||||||||| |||||  |||||||||||||| |  ||| ||||||||||||| ||||    
T  29489343 gaagagagaggataagaccatcatgtgagtatgagagagaaagttgtaccaaagttatcacaaaatggttgtacaaatatcatttctctt 29489432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 96
Target Start/End: Original strand, 26585154 - 26585246
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctt 96  Q
    ||||||||||||||||||||| |||||| ||  || ||||| ||| ||||| ||||||||||||||| || ||| ||||||||||||| ||||    
T  26585154 aaggaagagagaggataagaccatcatgcgattatgagagaaaaagttgtacaaaagttatcacaaaatagttgtacaaatatcatttctctt 26585246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 96
Target Start/End: Original strand, 36669351 - 36669443
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctt 96  Q
    |||||||||||||||||| |  |||||||||| || ||||| ||| ||||| |||| |||||||||||| |||| ||||||||||||| ||||    
T  36669351 aaggaagagagaggataaaaacatcatgtgagtatgagagaaaaagttgtacaaaaattatcacaaattgattgtacaaatatcatttctctt 36669443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 96
Target Start/End: Original strand, 6829766 - 6829856
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctt 96  Q
    |||||||||||| |||||||| |||||||||  || ||||| ||| ||||| ||||||| |||||||||| ||| ||||||||||||| ||||    
T  6829766 aaggaagagagatgataagaccatcatgtga--atgagagataaagttgtacaaaagttgtcacaaattagttgtacaaatatcatttctctt 6829856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 41885807 - 41885718
Alignment:
Q  8 aagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttt 97  Q
    ||||||||| ||||||  || ||||||| || |||| |||||||||||||||  ||||||||| |||||| ||||||||||||| |||||    
T  41885807 aagagagagaataagaatataatgtgagtatgagagtgaaaattgtataaaaactatcacaaaataattgtacaaatatcatttctcttt 41885718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 7371929 - 7372016
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||| ||||||||||||||| ||||| | || || ||||||||||||||| |||| || ||| |||||| ||| |||||||||||||    
T  7371929 aaggaggagagaggataagaccatcatataagtatgagagagaaaattgtacaaaaattgtcataaattagttgtacaaatatcattt 7372016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 22171497 - 22171584
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||||||||||| || |||||||||| || | | ||||| ||||| |||| || ||||||||| | || |||||||||||||    
T  22171497 aaggaagagagaggataaaaccatcatgtgagtatgaaaaagaaagttgtacaaaaattgtcacaaattgactgtacaaatatcattt 22171584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 50528038 - 50528125
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||| ||||  |||||  || ||||||| || ||||| |||||||| |||||||| ||||||||| |||| |||||||||||||    
T  50528038 aaggaagaaagagagtaagaatataatgtgagtatgagagaaaaaattgtctaaaagttgtcacaaattgattgtacaaatatcattt 50528125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 18610838 - 18610768
Alignment:
Q  29 atgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttttt 99  Q
    ||||||| || ||||||||| ||||| ||||||| ||||||| || ||| ||||||||||||| |||||||    
T  18610838 atgtgagtatgagagagaaagttgtaaaaaagttgtcacaaaatagttgtacaaatatcatttctcttttt 18610768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 32821728 - 32821638
Alignment:
Q  1 aagaaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||| |||||||||  |||||  || ||||||| || |||||||||||||| |||||||| ||||||| |  ||| |||||||||||||    
T  32821728 aagaagaaagagagagagtaagaatataatgtgagtatgagagagaaaattgtttaaaagttgtcacaaagtggttgtacaaatatcattt 32821638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 97
Target Start/End: Complemental strand, 9011731 - 9011642
Alignment:
Q  8 aagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttt 97  Q
    ||||||||||||||||| ||||| | |  || ||||||||| |||||| |||||| ||||||| |  ||| ||||||||||||| |||||    
T  9011731 aagagagaggataagaccatcatataaatatgagagagaaagttgtatcaaagttgtcacaaaatggttgtacaaatatcatttctcttt 9011642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 11460884 - 11460789
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaatta---attgcacaaatatcatttatctt 96  Q
    ||||||||||| |  |||||  || ||||||  ||||||||||||||||| |||||||||||||||| ||   |||| ||||||||||||| ||||    
T  11460884 aaggaagagagcgtgtaagaatataatgtgaatataagagagaaaattgtgtaaaagttatcacaaaataatgattgtacaaatatcatttctctt 11460789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 27352720 - 27352627
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttt 97  Q
    |||||||||||||  |||||  || ||||||| || ||||||||| ||||  ||||||||||||||| |  ||| ||||||||||||| |||||    
T  27352720 aaggaagagagagagtaagaatataatgtgagtatgagagagaaagttgtccaaaagttatcacaaaatggttgtacaaatatcatttctcttt 27352627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 43105192 - 43105108
Alignment:
Q  7 gaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||| ||||||  || || |||| || |||||||||||||||||||| ||||   ||| |||||| |||||||||||||    
T  43105192 gaagagagagaataagaagataatatgagtatgagagagaaaattgtataaaaattatacaaaaataattgtacaaatatcattt 43105108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 15061935 - 15061848
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||| ||||||  || ||||||| || ||||||||||||||  ||||||| ||||||| |  ||  |||||||||||||    
T  15061935 aaggaagagagagaataagatgataatgtgagtatgagagagaaaattgtcaaaaagttgtcacaaagtggttatacaaatatcattt 15061848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 18959094 - 18959007
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||| |||||| ||| ||||||| || ||||||||||||||  ||||||| | ||||| |  ||| | |||||||||||    
T  18959094 aaggaagagagagaataagataataatgtgagtatgagagagaaaattgtcaaaaagttgtaacaaaatggttgtataaatatcattt 18959007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 36930735 - 36930821
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||||||  |||||  || ||||||| || ||||||||| |||| |||||||| ||||||| | |||| |||||||||||||    
T  36930735 aaggaagagagagagtaagaatataatgtgagtatgagagagaaagttgtctaaaagtt-tcacaaaatgattgtacaaatatcattt 36930821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 45350080 - 45350163
Alignment:
Q  8 aagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||  ||||||  || ||||||| || ||||| |||||| | ||||| |||||||||| |||||| |||||||||||||    
T  45350080 aagagagaaaataagaatataatgtgagtatgagagaaaaaattatctaaaaattatcacaaaataattgtacaaatatcattt 45350163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 50035519 - 50035605
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||||| ||||| |  ||||||||||| |  |||||||| ||||||||||||| ||||||| |  ||| |||||||||||||    
T  50035519 aaggaagagagatgataaaaatatcatgtgaga-tgggagagaaagttgtataaaagttgtcacaaaatggttgtacaaatatcattt 50035605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 19651500 - 19651434
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaa 70  Q
    ||||||||||||| ||||||  |||||||||| || ||||||||| || || ||||||| |||||||    
T  19651500 aaggaagagagagaataagaacatcatgtgagtatgagagagaaagttatacaaaagttgtcacaaa 19651434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 37 - 91
Target Start/End: Complemental strand, 32938916 - 32938862
Alignment:
Q  37 ataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||||| ||||  |||| || |||||||||||||| |||||||||||||    
T  32938916 ataagagagaaagttgttaaaaaattgtcacaaattaattgtacaaatatcattt 32938862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 7078481 - 7078574
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttt 97  Q
    |||||||||||| || ||||  || ||||||| || ||||||||| ||||  ||||||| ||||||| ||  || ||||||||||||| |||||    
T  7078481 aaggaagagagaagaaaagaatattatgtgagtatgagagagaaagttgttcaaaagttgtcacaaaatagatgtacaaatatcatttctcttt 7078574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 96
Target Start/End: Original strand, 11097865 - 11097957
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctt 96  Q
    ||||||||||||||| ||||  || ||||||| || ||||||||| ||||  ||||||| ||||||| |   || ||||||||||||| ||||    
T  11097865 aaggaagagagaggaaaagaatattatgtgagtatgagagagaaagttgttcaaaagttgtcacaaaatggatgtacaaatatcatttctctt 11097957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 23554841 - 23554749
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctt 96  Q
    ||||||||||||| ||||||  || ||||||| || ||||| ||| |||| ||||| |||||| ||| |  ||| ||||||||||||| ||||    
T  23554841 aaggaagagagagaataagaatataatgtgagtatgagagataaagttgtttaaaaattatcaaaaaatggttgtacaaatatcatttctctt 23554749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 11 - 91
Target Start/End: Complemental strand, 26501378 - 26501298
Alignment:
Q  11 agagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||||||  ||||||| || || ||||||||| ||||  ||||||||| ||||| |  ||| |||||||||||||    
T  26501378 agagaggataagaacatcatgtaagtatgagagagaaagttgtccaaaagttattacaaaatggttgtacaaatatcattt 26501298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 27895741 - 27895813
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaatt 76  Q
    ||||||||||||| |||||| |||| |||||| || ||||||||| ||||  |||| |||| |||||| ||||    
T  27895741 aaggaagagagagaataagaaaatcttgtgagtatgagagagaaagttgtcaaaaaattattacaaatgaatt 27895813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 35972788 - 35972872
Alignment:
Q  7 gaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||| |||||||  |||||||  | || ||||||||| ||||| ||||||| ||||||| |  ||| |||||||||||||    
T  35972788 gaagagagaagataagaatatcatgtttgtatgagagagaaagttgtacaaaagttgtcacaaaatggttgaacaaatatcattt 35972872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 91
Target Start/End: Original strand, 38019524 - 38019572
Alignment:
Q  43 gagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||| |||| |||||||||||||||| |||||  |||||||||||||    
T  38019524 gagaaagttgtctaaaagttatcacaaaataattatacaaatatcattt 38019572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 40118699 - 40118783
Alignment:
Q  7 gaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||| ||||||  || ||||||| || ||||||||||||||| |||| ||||   ||| | |||| |||||||||||||    
T  40118699 gaagagagagaataagaagataatgtgagtatgagagagaaaattgtacaaaaattatacaaaaatgattgtacaaatatcattt 40118783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 50141919 - 50142003
Alignment:
Q  7 gaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||| |||||| ||| ||||||| || ||||||||| ||||  ||||||| | | ||| || ||| |||||||||||||    
T  50141919 gaagagagagaataagagaataatgtgagtatgagagagaaagttgtcaaaaagttgtgagaaaatagttgaacaaatatcattt 50142003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 17902676 - 17902760
Alignment:
Q  7 gaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||||||||||| |||||||||| || ||||||||| ||||||||||||| ||| |||||| ||  |||||||||||||    
T  17902676 gaagagagaggataagaccatcatgtgagtatcagagagaaagttgtataaaagttgtcataaattagttatacaaatatcattt 17902760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 91
Target Start/End: Complemental strand, 2056870 - 2056786
Alignment:
Q  7 gaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||||||||||| |||||||||| || ||||||||| | ||| ||||||| |||||||||  ||| |||||||||||||    
T  2056870 gaagagagaggataagaccatcatgtgagtatgagagagaaagtagtacaaaagttgtcacaaattggttgtacaaatatcattt 2056786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 27334948 - 27334853
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttttt 99  Q
    ||||||||||||||||||||| |||||||||| || |||  |||| || || ||||||| ||||||| || ||| ||||||||||||| |||||||    
T  27334948 aaggaagagagaggataagaccatcatgtgagtatgagaaggaaagttatacaaaagttgtcacaaaatagttgtacaaatatcatttctcttttt 27334853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 27395688 - 27395593
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttttt 99  Q
    ||||||||||||||||||||| |||||||||| || |||  |||| || || ||||||| ||||||| || ||| ||||||||||||| |||||||    
T  27395688 aaggaagagagaggataagaccatcatgtgagtatgagaaggaaagttatacaaaagttgtcacaaaatagttgtacaaatatcatttctcttttt 27395593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 3339480 - 3339573
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttt 97  Q
    |||||||||| ||||||||||  ||||||||| || ||||||||| ||||| ||||||| ||||||| |  ||| ||||||||||||| |||||    
T  3339480 aaggaagagataggataagaccgtcatgtgagtatgagagagaaagttgtacaaaagttgtcacaaaatggttgtacaaatatcatttctcttt 3339573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 40 - 96
Target Start/End: Original strand, 1434681 - 1434737
Alignment:
Q  40 agagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctt 96  Q
    ||||| ||||||||  |||| ||||||||||||||||| ||||||||||||||||||    
T  1434681 agagaaaaaattgtcaaaaaattatcacaaattaattgtacaaatatcatttatctt 1434737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 99
Target Start/End: Complemental strand, 32729979 - 32729884
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttttt 99  Q
    |||||||||||||  |||||  || ||||||| || ||||||||| ||||||||||||| ||| ||| |  ||| ||||||||||||| |||||||    
T  32729979 aaggaagagagagagtaagaatataatgtgagtatgagagagaaagttgtataaaagttgtcagaaaatggttgtacaaatatcatttctcttttt 32729884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 8173331 - 8173380
Alignment:
Q  42 agagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||||| |||||||||||||||| |  |||||||||||||||||    
T  8173331 agagaaaattgtctaaaagttatcacaaagtggttgcacaaatatcattt 8173380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 15722484 - 15722577
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttt 97  Q
    ||||||||||||| |||| || || ||||||| || ||||||||  ||||  ||||||| ||||||| | |||| ||||||||||||| |||||    
T  15722484 aaggaagagagagaataatactataatgtgagtatgagagagaaggttgtcaaaaagttgtcacaaaatgattgtacaaatatcatttctcttt 15722577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 26668586 - 26668493
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttt 97  Q
    |||||||||||||||||| |  || ||||||| ||||||||||||||| |  |||| ||||  |||| | |||| ||||||||||||| |||||    
T  26668586 aaggaagagagaggataataacatgatgtgagtataagagagaaaattatcaaaaaattatagcaaaatgattgtacaaatatcatttctcttt 26668493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 32457233 - 32457320
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||| ||||||  || ||||||| ||  |||||||||||||  ||||||| ||||||| |  ||| |||||||||||||    
T  32457233 aaggaagagagagaataagagtataatgtgagtatgtgagagaaaattgtcaaaaagttgtcacaaagtggttgtacaaatatcattt 32457320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 10521191 - 10521129
Alignment:
Q  29 atgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||| || ||||| |||||| |  ||||||||||||||| |||||| |||||||||||||    
T  10521191 atgtgagtatgagagataaaattatcaaaaagttatcacaaagtaattgtacaaatatcattt 10521129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 237379 - 237472
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttt 97  Q
    ||||| |||||| |||||||  |||||||||| || ||||||||| ||||  |||||| |||||||  |  ||| ||||||||||||| |||||    
T  237379 aaggatgagagacgataagaacatcatgtgagtatgagagagaaagttgtcaaaaagtaatcacaagatggttgtacaaatatcatttctcttt 237472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 9954636 - 9954551
Alignment:
Q  6 ggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||| ||||||  || |||| || || ||||||||| ||||  ||||||| |||||||||  ||| |||||||||||||    
T  9954636 ggaagagagagaataagaggataatgtaagtatgagagagaaagttgtcaaaaagttgtcacaaattggttgtacaaatatcattt 9954551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 96
Target Start/End: Original strand, 19789057 - 19789149
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatctt 96  Q
    ||||||||||||| ||||||| || ||||||| || ||||||||| ||||  ||||||| | | ||| |  ||| ||||||||||||| ||||    
T  19789057 aaggaagagagagaataagactataatgtgagtatgagagagaaagttgtcaaaaagttgtaataaaatggttgtacaaatatcatttctctt 19789149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 89
Target Start/End: Complemental strand, 21443753 - 21443693
Alignment:
Q  29 atgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcat 89  Q
    ||||||| || |||| ||| ||||| |||||||||||||||| | |||| |||||||||||    
T  21443753 atgtgagtatgagagggaagattgtctaaaagttatcacaaagtgattgtacaaatatcat 21443693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 147237 - 147324
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||||| |||||||| ||||| |||| || ||||||||| ||||| ||||||| |||||||||||||| ||| |||||||||    
T  147237 aaggaagagagacgataagaccatcatatgagtatgagagagaaagttgtacaaaagttgtcacaaattaattgtacagatatcattt 147324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 91
Target Start/End: Original strand, 249126 - 249210
Alignment:
Q  7 gaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||| | |||||||| |||||||||| || ||||||||| ||||| ||||||||||||||||| ||||  ||||||||||||    
T  249126 gaagagaaatgataagaccatcatgtgagtatgagagagaaagttgtacaaaagttatcacaaattgattgtgcaaatatcattt 249210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 97
Target Start/End: Complemental strand, 36085 - 35999
Alignment:
Q  11 agagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttt 97  Q
    |||||| |||||| ||| ||||||| |||||||||||| ||||  |||| |||||||||| || ||| ||||||||||||| |||||    
T  36085 agagagaataagagaataatgtgagtataagagagaaagttgtcaaaaaattatcacaaagtagttgtacaaatatcatttctcttt 35999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 3450 - 3357
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagtta-tcacaaattaattgcacaaatatcatttatcttt 97  Q
    ||||||||||||||||||||| ||||| |||  || ||||||||||||||| |||| ||| | |||||||| ||| || |||||||||| |||||    
T  3450 aaggaagagagaggataagaccatcatatgaatatgagagagaaaattgtacaaaaattagtaacaaattagttgtac-aatatcatttctcttt 3357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 4 - 97
Target Start/End: Original strand, 2207 - 2300
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttt 97  Q
    |||||||||||||||||| |  || ||||||| ||||||||||||||| |  |||| ||||  |||| | |||| ||||||||||||| |||||    
T  2207 aaggaagagagaggataataacatgatgtgagtataagagagaaaattatcaaaaaattatagcaaaatgattgtacaaatatcatttctcttt 2300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 23270 - 23330
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttat 64  Q
    ||||||||||||| |||| | ||| ||||||| || ||||||||  |||||||||||||||    
T  23270 aaggaagagagagaataaaaaaataatgtgagtatgagagagaatgttgtataaaagttat 23330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 34799 - 34862
Alignment:
Q  29 atgtgagaataagagagaaaattgt-ataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||| || ||||||||| |||| |||||| || |||||||||||||| |||||||||||||    
T  34799 atgtgagtatgagagagaaagttgtcataaaaattgtcacaaattaattgtacaaatatcattt 34862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 4 - 91
Target Start/End: Complemental strand, 6907 - 6820
Alignment:
Q  4 aaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    ||||||||||||| ||||||  || ||||||| || ||||||||| ||||  ||||||| ||| ||||| ||||  ||||||||||||    
T  6907 aaggaagagagagaataagaggataatgtgagtatgagagagaaagttgtcaaaaagttgtcataaattgattgtccaaatatcattt 6820  T

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Target: scaffold0522 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0522
Description:

Target: scaffold0522; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 2482 - 2572
Alignment:
Q  1 aagaaggaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcattt 91  Q
    |||||||||||||||| ||||||   ||||||||| || ||||||||| ||||  |||| |||||||| | ||  || |||||||||||||    
T  2482 aagaaggaagagagagaataagaatctcatgtgagtatgagagagaaagttgtccaaaaattatcacataatagatgtacaaatatcattt 2572  T

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Target: scaffold0036 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 7 - 99
Target Start/End: Complemental strand, 18091 - 17999
Alignment:
Q  7 gaagagagaggataagacaatcatgtgagaataagagagaaaattgtataaaagttatcacaaattaattgcacaaatatcatttatcttttt 99  Q
    |||||||||| ||||||  || |||| || || ||||||||||||||   |||||| ||| ||| ||||||  |||||||||||| |||||||    
T  18091 gaagagagagaataagagtataatgtaagtatgagagagaaaattgtcacaaagttgtcaaaaaataattgtccaaatatcatttctcttttt 17999  T

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