View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11874_high_21 (Length: 358)

Name: NF11874_high_21
Description: NF11874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11874_high_21
NF11874_high_21
[»] chr4 (4 HSPs)
chr4 (1-340)||(2720245-2720579)
chr4 (293-340)||(6942504-6942551)
chr4 (297-340)||(54612654-54612696)
chr4 (296-340)||(7162262-7162306)
[»] chr2 (9 HSPs)
chr2 (293-340)||(8335286-8335333)
chr2 (293-340)||(9707142-9707189)
chr2 (297-340)||(7721636-7721679)
chr2 (293-340)||(3369969-3370016)
chr2 (293-340)||(11252626-11252673)
chr2 (293-340)||(30560964-30561011)
chr2 (297-340)||(38554112-38554155)
chr2 (293-340)||(43664858-43664905)
chr2 (269-321)||(28226249-28226300)
[»] chr1 (5 HSPs)
chr1 (293-340)||(47949991-47950038)
chr1 (266-340)||(47176788-47176871)
chr1 (297-340)||(11908596-11908639)
chr1 (293-328)||(28924048-28924083)
chr1 (294-340)||(30910187-30910233)
[»] scaffold0095 (1 HSPs)
scaffold0095 (298-340)||(36478-36520)
[»] chr8 (1 HSPs)
chr8 (298-340)||(39400982-39401024)
[»] chr7 (2 HSPs)
chr7 (274-340)||(3399211-3399277)
chr7 (296-340)||(32650064-32650108)
[»] chr5 (4 HSPs)
chr5 (294-340)||(5844412-5844458)
chr5 (293-333)||(3494492-3494532)
chr5 (293-340)||(37146031-37146078)
chr5 (293-340)||(42207076-42207123)
[»] chr3 (2 HSPs)
chr3 (293-340)||(50164067-50164114)
chr3 (294-340)||(55016189-55016235)
[»] scaffold0129 (1 HSPs)
scaffold0129 (284-340)||(37468-37524)


Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 2720245 - 2720579
Alignment:
Q  1 aaataactctaaacatatttaactgcaaaataacatcatagattcttcatttattataaaca--aacataggtaccttcttaaaaaagaaggaaccttaa 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||| |||||||||||||||    
T  2720245 aaataactctaaacatatttaactgcaaaataacatcatagattcttcatttattataaacacaaacatag-taccttcttaaagaagaaggaaccttaa 2720343  T
Q  99 gaagcatcagataatatgcaagcaggccattgtttgcaaaatctcaattctaaattattagcagatgtttgcttgtcttttctattggtccagtagaaaa 198  Q
    ||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||    
T  2720344 gaagcatcagataatatgcaag---gccattgtttgcaaaatctcaattctaaattattagtagatgtttgcttgtcttttttattggtctagtagaaaa 2720440  T
Q  199 taatttagggcgcatatttgaaagagcttacttacttacatcttttatgagtttatcttattgatataaataaggaaaatgctaacttgtgccccaagat 298  Q
    |||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||| |||| ||||||    
T  2720441 taatttagggcgc--atttgaaagagcttacttacttacaacttttatgagtttatctta-tgatctaaataaggaaaatgctaacttatgcctcaagat 2720537  T
Q  299 aaggatctaaaaatagaattaaaaattaaatgttgcattgaa 340  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  2720538 aaggatctaaaaatagaattaaaaattaaatattgcattgaa 2720579  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 340
Target Start/End: Complemental strand, 6942551 - 6942504
Alignment:
Q  293 caagataaggatctaaaaatagaattaaaaattaaatgttgcattgaa 340  Q
    ||||||||  ||||||||||||||||||||| ||||||| ||||||||    
T  6942551 caagataaaaatctaaaaatagaattaaaaaataaatgtggcattgaa 6942504  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 340
Target Start/End: Complemental strand, 54612696 - 54612654
Alignment:
Q  297 ataaggatctaaaaatagaattaaaaattaaatgttgcattgaa 340  Q
    |||||||||||||| |||||||||||| ||||||||||||||||    
T  54612696 ataaggatctaaaactagaattaaaaa-taaatgttgcattgaa 54612654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 340
Target Start/End: Complemental strand, 7162306 - 7162262
Alignment:
Q  296 gataaggatctaaaaatagaattaaaaattaaatgttgcattgaa 340  Q
    ||||||||||| |||||||||||||||| ||||| || |||||||    
T  7162306 gataaggatcttaaaatagaattaaaaaataaatattacattgaa 7162262  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 293 - 340
Target Start/End: Complemental strand, 8335333 - 8335286
Alignment:
Q  293 caagataaggatctaaaaatagaattaaaaattaaatgttgcattgaa 340  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  8335333 caagagaaggatctaaaaatagaattaaaaaataaatgttgcattgaa 8335286  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 293 - 340
Target Start/End: Complemental strand, 9707189 - 9707142
Alignment:
Q  293 caagataaggatctaaaaatagaattaaaaattaaatgttgcattgaa 340  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||    
T  9707189 caagataaagatctaaaaatagaattaaaaaataaatgttgcattgaa 9707142  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 340
Target Start/End: Complemental strand, 7721679 - 7721636
Alignment:
Q  297 ataaggatctaaaaatagaattaaaaattaaatgttgcattgaa 340  Q
    |||| |||||||||||||||||||||| ||||||||||||||||    
T  7721679 ataatgatctaaaaatagaattaaaaaataaatgttgcattgaa 7721636  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 340
Target Start/End: Complemental strand, 3370016 - 3369969
Alignment:
Q  293 caagataaggatctaaaaatagaattaaaaattaaatgttgcattgaa 340  Q
    |||||||| |||||||||||||||||  ||| ||||||||||||||||    
T  3370016 caagataatgatctaaaaatagaatttcaaaataaatgttgcattgaa 3369969  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 340
Target Start/End: Complemental strand, 11252673 - 11252626
Alignment:
Q  293 caagataaggatctaaaaatagaattaaaaattaaatgttgcattgaa 340  Q
    ||||||||||||||||||||||||||| ||| |||||| || ||||||    
T  11252673 caagataaggatctaaaaatagaattagaaaataaatggtgtattgaa 11252626  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 340
Target Start/End: Original strand, 30560964 - 30561011
Alignment:
Q  293 caagataaggatctaaaaatagaattaaaaattaaatgttgcattgaa 340  Q
    ||||||| |||||||||| ||||||| |||| ||||||||||||||||    
T  30560964 caagatagggatctaaaagtagaatttaaaaataaatgttgcattgaa 30561011  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 340
Target Start/End: Original strand, 38554112 - 38554155
Alignment:
Q  297 ataaggatctaaaaatagaattaaaaattaaatgttgcattgaa 340  Q
    |||| ||||||||||||||||| |||| ||||||||||||||||    
T  38554112 ataaagatctaaaaatagaatttaaaaataaatgttgcattgaa 38554155  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 340
Target Start/End: Complemental strand, 43664905 - 43664858
Alignment:
Q  293 caagataaggatctaaaaatagaattaaaaattaaatgttgcattgaa 340  Q
    |||||||| |||||||||||||||||||||| ||||| || |||||||    
T  43664905 caagataatgatctaaaaatagaattaaaaaataaatattacattgaa 43664858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 269 - 321
Target Start/End: Complemental strand, 28226300 - 28226249
Alignment:
Q  269 taaggaaaatgctaacttgtgccccaagataaggatctaaaaatagaattaaa 321  Q
    ||||||||||| |||||||||||| ||  ||||||||| ||||||||||||||    
T  28226300 taaggaaaatgataacttgtgcccaaat-taaggatcttaaaatagaattaaa 28226249  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 293 - 340
Target Start/End: Original strand, 47949991 - 47950038
Alignment:
Q  293 caagataaggatctaaaaatagaattaaaaattaaatgttgcattgaa 340  Q
    |||||||||||||| |||||||||||||||| ||||| ||||||||||    
T  47949991 caagataaggatcttaaaatagaattaaaaaataaatattgcattgaa 47950038  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 266 - 340
Target Start/End: Complemental strand, 47176871 - 47176788
Alignment:
Q  266 aaataaggaaaatgctaacttgtgccc--------caagataaggatctaaaaatagaa-ttaaaaattaaatgttgcattgaa 340  Q
    |||||||||||||| ||||||||||||        |||||||||||||||||||||||| ||||||| ||||| ||||||||||    
T  47176871 aaataaggaaaatgttaacttgtgccctaagagcacaagataaggatctaaaaatagaatttaaaaaataaatattgcattgaa 47176788  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 340
Target Start/End: Complemental strand, 11908639 - 11908596
Alignment:
Q  297 ataaggatctaaaaatagaattaaaaattaaatgttgcattgaa 340  Q
    |||| |||||||| ||||||||||||| ||||||||||||||||    
T  11908639 ataaagatctaaatatagaattaaaaaataaatgttgcattgaa 11908596  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 328
Target Start/End: Original strand, 28924048 - 28924083
Alignment:
Q  293 caagataaggatctaaaaatagaattaaaaattaaa 328  Q
    ||||||||| ||||||||||||||||||||||||||    
T  28924048 caagataagaatctaaaaatagaattaaaaattaaa 28924083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 340
Target Start/End: Original strand, 30910187 - 30910233
Alignment:
Q  294 aagataaggatctaaaaatagaattaaaaattaaatgttgcattgaa 340  Q
    |||||||| |||||||||||||||| |||| ||||||||| ||||||    
T  30910187 aagataagaatctaaaaatagaattgaaaaataaatgttggattgaa 30910233  T

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Target: scaffold0095 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 340
Target Start/End: Original strand, 36478 - 36520
Alignment:
Q  298 taaggatctaaaaatagaattaaaaattaaatgttgcattgaa 340  Q
    ||||||| |||||||||||||||||| ||||||||||||||||    
T  36478 taaggatttaaaaatagaattaaaaaataaatgttgcattgaa 36520  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 340
Target Start/End: Complemental strand, 39401024 - 39400982
Alignment:
Q  298 taaggatctaaaaatagaattaaaaattaaatgttgcattgaa 340  Q
    ||||||| |||||||||||||||||| ||||||||||||||||    
T  39401024 taaggatttaaaaatagaattaaaaaataaatgttgcattgaa 39400982  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 274 - 340
Target Start/End: Original strand, 3399211 - 3399277
Alignment:
Q  274 aaaatgctaacttgtgccccaagataaggatctaaaaatagaattaaaaattaaatgttgcattgaa 340  Q
    ||||| |||||||| | | |||||||||||||||||||||||| | |||| ||||| ||||||||||    
T  3399211 aaaatactaacttgagacacaagataaggatctaaaaatagaaatgaaaaataaatattgcattgaa 3399277  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 32650064 - 32650108
Alignment:
Q  296 gataaggatctaaaaatagaattaaaaattaaatgttgcattgaa 340  Q
    ||||||||||||||| | |||||||||| ||||||||| ||||||    
T  32650064 gataaggatctaaaagtggaattaaaaaataaatgttgtattgaa 32650108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 340
Target Start/End: Complemental strand, 5844458 - 5844412
Alignment:
Q  294 aagataaggatctaaaaatagaattaaaaattaaatgttgcattgaa 340  Q
    |||||||||| ||||||||||||||||||| |||||| |||||||||    
T  5844458 aagataaggacctaaaaatagaattaaaaaataaatgctgcattgaa 5844412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 293 - 333
Target Start/End: Original strand, 3494492 - 3494532
Alignment:
Q  293 caagataaggatctaaaaatagaattaaaaattaaatgttg 333  Q
    |||||||||||||||||||| |||||||||| |||||||||    
T  3494492 caagataaggatctaaaaatggaattaaaaaataaatgttg 3494532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 340
Target Start/End: Original strand, 37146031 - 37146078
Alignment:
Q  293 caagataaggatctaaaaatagaattaaaaattaaatgttgcattgaa 340  Q
    ||||| ||||||||||||| ||||||||||||||||| |||| |||||    
T  37146031 caagacaaggatctaaaaaaagaattaaaaattaaatattgcgttgaa 37146078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 340
Target Start/End: Original strand, 42207076 - 42207123
Alignment:
Q  293 caagataaggatctaaaaatagaattaaaaattaaatgttgcattgaa 340  Q
    |||||||| |||||||||||| |||||| || ||||||||||||||||    
T  42207076 caagataaagatctaaaaataaaattaagaaataaatgttgcattgaa 42207123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 340
Target Start/End: Complemental strand, 50164114 - 50164067
Alignment:
Q  293 caagataaggatctaaaaatagaattaaaaattaaatgttgcattgaa 340  Q
    |||||||||||||||||| | |||||||||| ||||||||| ||||||    
T  50164114 caagataaggatctaaaagtggaattaaaaaataaatgttgtattgaa 50164067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 340
Target Start/End: Complemental strand, 55016235 - 55016189
Alignment:
Q  294 aagataaggatctaaaaatagaattaaaaattaaatgttgcattgaa 340  Q
    ||||||||||| ||||| | |||||||||| ||||||||||||||||    
T  55016235 aagataaggatttaaaagtggaattaaaaagtaaatgttgcattgaa 55016189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 340
Target Start/End: Complemental strand, 37524 - 37468
Alignment:
Q  284 cttgtgccccaagataaggatctaaaaatagaattaaaaattaaatgttgcattgaa 340  Q
    |||||| | ||||||||| || | |||||||||||||||| ||||| ||||||||||    
T  37524 cttgtggcacaagataagaatattaaaatagaattaaaaaataaatattgcattgaa 37468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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