View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11874_high_27 (Length: 284)
Name: NF11874_high_27
Description: NF11874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11874_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 265
Target Start/End: Complemental strand, 4164645 - 4164396
Alignment:
| Q |
16 |
agcagagatgtaaagttatccccaacagaaaattttagaattagctaatcatgatccactaacacaaacagatatggtgtcaaaaatacaatctattaac |
115 |
Q |
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| T |
4164645 |
agcagagatgtaaagttatccccaacagaaaattttagaattagctaatcatgatccactgacacaaacagatatggtgtcaaaaatacaatctattaac |
4164546 |
T |
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| Q |
116 |
ttagcaatctgcatgtttaccctatctagcagtaattttaacttctccattttggttgtaacagataaaacagaacatcagaaccttgttaaagtataat |
215 |
Q |
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| T |
4164545 |
ttagcaatctgcatgtttaccctatctagcagtaattttaacttctccattttggttgtaacagataaaacagaacatcagaaccttgttaaagtatagt |
4164446 |
T |
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| Q |
216 |
gcgaattcaccattaaacaaaacagtaatagagaaaatatgagtcaggcc |
265 |
Q |
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| T |
4164445 |
gcgaattcaccattaaacaaaacagtaatagagaaaatatgagtcaggcc |
4164396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 16 - 247
Target Start/End: Complemental strand, 4177883 - 4177649
Alignment:
| Q |
16 |
agcagagatgtaaagttatccccaacagaaaattttagaattagctaatcatgatccactaacacaaacagatatggtgt--caaaaatacaatctatta |
113 |
Q |
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| T |
4177883 |
agcagagatgtaaagttatccccaacagaaaatttcagcattagctgatcatgatccacaaacacaaaaagacatggtgtgtcaaaaatacaatctattt |
4177784 |
T |
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| Q |
114 |
acttagcaatctgcatgtttaccctatctagcagtaatttt-aacttctccattttggttgtaacagataaaacagaacatcagaaccttgttaaagtat |
212 |
Q |
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| T |
4177783 |
acttagcaatctacatatttaccctatctagcaggaattttgaacttctccaattttgttgtaacagataaaacagaacatcagaaccttgttaaagtat |
4177684 |
T |
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| Q |
213 |
aatgcgaattcaccattaaacaaaacagtaataga |
247 |
Q |
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| T |
4177683 |
agtgagaattcaccgttaaacaacacaataataga |
4177649 |
T |
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