View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11874_high_36 (Length: 241)
Name: NF11874_high_36
Description: NF11874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11874_high_36 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 44322122 - 44322346
Alignment:
| Q |
1 |
tatgtaccatatttgtatcatcagnnnnnnnagactaaaattatctttaccatacaatgagattttaattaagtaattgggattgactgcagagataata |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44322122 |
tatgtaccatatttgtatcatcagtttttttagactaaaattatctttaccatacaatgagattttaattaagtaattgggattgactgcagagataata |
44322221 |
T |
|
| Q |
101 |
agagctgcttcaagtattgaagcttagttattccttcaaaatggattcttgaatttagctaagtaatttttagagttctcttttgaaataaatcaataat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
44322222 |
agagctgcttcaagtattgaagcttagttattccttcaaaatggattgttgaatttagctaagtaatctttagagttctcttttgaaataaatcaataat |
44322321 |
T |
|
| Q |
201 |
atggattggtgttgtgagacagttg |
225 |
Q |
| |
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|||||||||||||||||||| |||| |
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| T |
44322322 |
atggattggtgttgtgagaccgttg |
44322346 |
T |
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