View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11874_high_41 (Length: 214)
Name: NF11874_high_41
Description: NF11874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11874_high_41 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 5 - 202
Target Start/End: Original strand, 47905102 - 47905301
Alignment:
| Q |
5 |
gggaaacaaattggatttttgtgtttcatgaagatgcaggaaggtaagaaaatggttcatgtgtttcataatgttatgtttggaacatacaaaacagagg |
104 |
Q |
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| T |
47905102 |
gggaaacaaattggatttttgtgtttcatgaagatgcaggaaggtaagaaaatggttcatgtgtttcatgatgttatgtttggaacatggaaaacagagg |
47905201 |
T |
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| Q |
105 |
caaggctgcaaaatcaggatgaagttgttggtatgatgaatgatataatgtcatggaaca--atgtcatattttttgtatgcatggtgtgcatgatgtct |
202 |
Q |
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| T |
47905202 |
cgaggttgcaaagtcaggatgaagttgttggtatgatgaatgatataaagtcatggaacaatatgtcatattttttgtatgcatggtgtgcatgatgtct |
47905301 |
T |
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