View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11874_high_42 (Length: 212)
Name: NF11874_high_42
Description: NF11874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11874_high_42 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 25745482 - 25745301
Alignment:
| Q |
13 |
agcagagataccaaagctcaggtttgtggattacagtggaatagacattacaaagagatattaagtggtcatggttttagtacaagtccagaacacaacc |
112 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
25745482 |
agcatagataccaaagctcaggtttgtggattacaatggaatagacattacaaagagatattaagtggtcatggctttagtacaagtccagaacacaacc |
25745383 |
T |
|
| Q |
113 |
aactgtgtttgtggcaatatccatctatgactaaagttggaggcttggaccctcatacttcgagagtccttcatctttctca |
194 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
25745382 |
aactgtgtttgtggcaatatccatccatgactaaagttggaggcttggaccctcatacttctagagtcctccatctttctca |
25745301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 7e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 68 - 194
Target Start/End: Original strand, 4348615 - 4348744
Alignment:
| Q |
68 |
agatattaagtggtcat---ggttttagtacaagtccagaacacaaccaactgtgtttgtggcaatatccatctatgactaaagttggaggcttggaccc |
164 |
Q |
| |
|
||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
|
|
| T |
4348615 |
agatattaagtggtcatcatggctttagtacaagtccagaacacaaccaactgtgtttgtggcaatatccatctatgactaaagttggtggcttggatcc |
4348714 |
T |
|
| Q |
165 |
tcatacttcgagagtccttcatctttctca |
194 |
Q |
| |
|
|||||||| |||||||| ||||||||||| |
|
|
| T |
4348715 |
ccatacttctagagtcctccatctttctca |
4348744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 31 - 132
Target Start/End: Complemental strand, 18928709 - 18928608
Alignment:
| Q |
31 |
caggtttgtggattacagtggaatagacattacaaagagatattaagtggtcatggttttagtacaagtccagaacacaaccaactgtgtttgtggcaat |
130 |
Q |
| |
|
||||||||||| ||||| ||||||||||| |||||||||||| |||||||||| | |||||||||| |||| |||| |||||||||||||||||||||| |
|
|
| T |
18928709 |
caggtttgtggtttacaatggaatagacaccacaaagagatatcaagtggtcatagctttagtacaaatccaaaacataaccaactgtgtttgtggcaat |
18928610 |
T |
|
| Q |
131 |
at |
132 |
Q |
| |
|
|| |
|
|
| T |
18928609 |
at |
18928608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 29 - 137
Target Start/End: Complemental strand, 36841081 - 36840973
Alignment:
| Q |
29 |
ctcaggtttgtggattacagtggaatagacattacaaagagatattaagtggtcatggttttagtacaagtccagaacacaaccaactgtgtttgtggca |
128 |
Q |
| |
|
||||||||||||| ||||| ||||||||| | |||||||||||||||||||||| |||||||||| |||| |||| ||||||||||||||||||| |
|
|
| T |
36841081 |
ctcaggtttgtggtttacaatggaatagatgccataaagagatattaagtggtcatgactttagtacaaatccaaaacattaccaactgtgtttgtggca |
36840982 |
T |
|
| Q |
129 |
atatccatc |
137 |
Q |
| |
|
||||||||| |
|
|
| T |
36840981 |
atatccatc |
36840973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 18928595 - 18928532
Alignment:
| Q |
134 |
catctatgactaaagttggaggcttggaccctcatact---tcgagagtccttcatctttctca |
194 |
Q |
| |
|
|||||||||| ||| ||||||||||| ||||||||||| || |||||||| ||||||||||| |
|
|
| T |
18928595 |
catctatgaccaaacttggaggcttgaaccctcatacttcctccagagtcctccatctttctca |
18928532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University