View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11874_high_6 (Length: 598)
Name: NF11874_high_6
Description: NF11874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11874_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 502; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 1 - 584
Target Start/End: Original strand, 3809887 - 3810451
Alignment:
| Q |
1 |
tacttccatgcacaatactgtgtttatcgatgagaaatggttctatattacaaaaaataaaaccaattactatttgcattcggaagaggaggagccacac |
100 |
Q |
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| T |
3809887 |
tacttccatgcacaatactgtgtttatcgatgagaaatggttctatattacaaaaaataaaaccaattactatttgaattcggaagaggaggagccacac |
3809986 |
T |
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| Q |
101 |
cgagcatgtcaaagcaaaatttttattggtaagcttatgtttgtagctgcagtggccagacccaggtttgacaacgaaggaaaggagacattctcaggga |
200 |
Q |
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| T |
3809987 |
cgaacatgtcaaagcaaaaattttattggtaagcttatgtttgtagctgcagtggccagacccaggtttgacaacgaaggaaaggagacattctcaggga |
3810086 |
T |
|
| Q |
201 |
agattggtatatttccatttgtgtatgaacagccagctagaagaagcagtgtcaacagagctgcagggactatagaaaggaaacctataacttctgtgac |
300 |
Q |
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| T |
3810087 |
agattggtatatttccatttgtgtatgaacagccagctagaagaagcagtgtcaacagagctgcagggactatagaaaggaaacctataacttctgtgac |
3810186 |
T |
|
| Q |
301 |
aagagaggtgaataaaactttcatgatgagcaaaatcttaccagcccttaagaattgctggccaatagaagatgtagggaagacaattttcattcaacaa |
400 |
Q |
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| T |
3810187 |
aagagaggtgaataaaactttcatgatgagcaaaatcttaccagcccttaagaattgctggccaatagaagatgtagggaagacaattttcattcaacaa |
3810286 |
T |
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| Q |
401 |
gacaatgcaaagtctcatatttctaaagatgatcctgatttttgtcgagcagcaagtgaagatgggtttgacattcgattgatttgtcaacctccgaatt |
500 |
Q |
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| T |
3810287 |
gagaatgcaaagtctcatatttctaaagatgatcctgatttttgtcgagcagcaagtgaagatgggtttg-------------------acctccgaatt |
3810367 |
T |
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| Q |
501 |
cacccgatttgaatgtcttggacttgggctttttcaatgccattcagtctttacagcagaaagaatcaatgaagtcaattgatg |
584 |
Q |
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| T |
3810368 |
cacccgatttgaatgtcttggacttgggctttttcaatgccattcagtatttacagcagaaagaatcaatgaagtcaattgatg |
3810451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 546
Target Start/End: Original strand, 1329564 - 1329651
Alignment:
| Q |
459 |
aagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattca |
546 |
Q |
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| T |
1329564 |
aagatgggttcgacattcgactgatgtgtcaacctcccaattcccctgaactaaatgtcttagaccttggcttcttcagtgccattca |
1329651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 440 - 528
Target Start/End: Original strand, 45489216 - 45489304
Alignment:
| Q |
440 |
ttttgtcgagcagcaagtgaagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttggg |
528 |
Q |
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| T |
45489216 |
ttttgtagagcagcttctgaaggtgggtttgacattcgattgatatgtcaaccacctaactctcccgatttgaatgttttggatttggg |
45489304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 546
Target Start/End: Complemental strand, 42539990 - 42539903
Alignment:
| Q |
459 |
aagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggctttttcaatgccattca |
546 |
Q |
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| T |
42539990 |
aagatgggttcgacattcgactgatgtgtcaacctcccaattcccctgaactaaatgtcttagaccttggcttcttcagtgccattca |
42539903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 440 - 516
Target Start/End: Original strand, 8187133 - 8187209
Alignment:
| Q |
440 |
ttttgtcgagcagcaagtgaagatgggtttgacattcgattgatttgtcaacctccgaattcacccgatttgaatgt |
516 |
Q |
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| T |
8187133 |
ttttgtagagcagcttttgaaggtgggtttgacattcgattgatatgttaacgacctaattctcccgatttgaatgt |
8187209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 470 - 534
Target Start/End: Complemental strand, 40286990 - 40286926
Alignment:
| Q |
470 |
gacattcgattgatttgtcaacctccgaattcacccgatttgaatgtcttggacttgggcttttt |
534 |
Q |
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| T |
40286990 |
gacattcgtttgacttttcaacctcctaattctcccgatttgaacgtattggatttaggcttttt |
40286926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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