View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11874_low_1 (Length: 712)
Name: NF11874_low_1
Description: NF11874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11874_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 652; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 652; E-Value: 0
Query Start/End: Original strand, 18 - 705
Target Start/End: Complemental strand, 39488232 - 39487545
Alignment:
| Q |
18 |
aattccttttgtctccagcttacatctagttggtaagatacatttagcagctctccataagaaattcctgaccctttgaggagttctaactttccaaatg |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39488232 |
aattccttttgtctccagcttacatctagttggtaagatacatttagcagctctccataagaaattcctgaccctttgaggagttctaactttccaaatg |
39488133 |
T |
|
| Q |
118 |
gccttccacataccggtgttacacattactgatgcttcaggggtgcctcgtaatgtctcttccttgagcagatggtatgctgatcgaacggagtattgac |
217 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39488132 |
gccttccacataccggtgttacacgttactgatacttcaggggtgcctcgtaatgtctcttccttgagtagatggtatgctgatcgaacggagtattgac |
39488033 |
T |
|
| Q |
218 |
cattcctttcccaattccaaaccttcttatcctcgggcagtctccatgaaataggaatgttgagaatttgattggcttcgaaagcattgaaactatgcag |
317 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39488032 |
cattcctttcccaattccaaaccttcttatcctcgggcagtctccatgaaataggaatgttgagaatttggttggcttcgaaagcattgaaactatgcag |
39487933 |
T |
|
| Q |
318 |
cacaagttcttttttccattgtttcaaatcaacatcaattaaatctgctacaacagcatcctcatttaaattgaagactgggctccacaccttgaagctc |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
39487932 |
cacaagttcttttttccattgtttcaaatcaacatcaattaaatctgctacaacagcatcctcatttaaattgcagactgggctccacaccttgaagctc |
39487833 |
T |
|
| Q |
418 |
gacagttcaggaagccaagggtctttccagattttaacttgttgcccattaccaatcgaccatctccatccgagatcaatcacagatttagcattcatca |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39487832 |
gacagttcaggaagccaagggtctttccagattttaacttgttgcccattaccaatcgaccatctccatccgagatcaatcacagatttagcattcatca |
39487733 |
T |
|
| Q |
518 |
aactgcgccaagcatagctgggctggtagccaatttgagcatccaaaaaacatgatctggaaaagtacctactcttgaacacccgagaaaggagggagtg |
617 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
39487732 |
aactgcgccaagcatagctgggctggtagtcaatttgagcatccaaaaaacatgatctggcaaagtacatactcttgaacacccgagaaaggagggagtg |
39487633 |
T |
|
| Q |
618 |
ttcgttgttcatgagtcgccaacattgcttccctagaagcgccttgttaaaatcactgaagcctccgaagccaagtcctcctttgctt |
705 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
39487632 |
ttcgttgttcatgagtcgccaacattgcttccctagaagcgccttgttaaaatcactgaagcctctgaagccaagtcctcctttgctt |
39487545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 394 - 647
Target Start/End: Original strand, 5806906 - 5807160
Alignment:
| Q |
394 |
actgggctccacaccttgaagctcgacagttcaggaagccaagggtctttccagattttaacttgttgcccattaccaatcgaccatct-ccatccgaga |
492 |
Q |
| |
|
||||| ||||| ||||||||||| | | ||||||||||||||||| ||||| ||| ||||||||||||| || ||||| ||||| || | | || ||| |
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|
| T |
5806906 |
actggactccaaaccttgaagcttggtaactcaggaagccaagggtccttccatattctaacttgttgcccgtttccaattgaccacctgcaaaccaaga |
5807005 |
T |
|
| Q |
493 |
tcaatcacagatttagcattcatcaaactgcgccaagcatagctgggctggtagccaatttgagcatccaaaaaacatgatctggaaaagtacctactct |
592 |
Q |
| |
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||||| | ||||| ||||| ||| || | ||||||||| || ||||| || ||| | | || | |||||||| || ||| | |||||||||||||| |
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| T |
5807006 |
tcaattattgattttgcattacacaagcttctccaagcataactaggctgataaccactacgtgccttcaaaaaacttgttctcggaaagtacctactct |
5807105 |
T |
|
| Q |
593 |
tgaacacccgagaaaggagggagtgttcgttgttcatgagtcgccaacattgctt |
647 |
Q |
| |
|
| ||||||| |||||||| |||||||| ||| ||| || ||||| |||||||| |
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|
| T |
5807106 |
taaacacccatgaaaggagagagtgttcattggacatcagccgccaccattgctt |
5807160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 5806689 - 5806762
Alignment:
| Q |
181 |
ttgagcagatggtatgctgatcgaacggagtattgaccattcctttcccaattccaaaccttcttatcctcggg |
254 |
Q |
| |
|
||||||||||||||||| |||| || ||||| | || || ||||| |||||||| ||||||||||||||||| |
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|
| T |
5806689 |
ttgagcagatggtatgccgatctgactgagtagtaactgtttctttctcaattccacaccttcttatcctcggg |
5806762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 616; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 18 - 705
Target Start/End: Complemental strand, 46034354 - 46033668
Alignment:
| Q |
18 |
aattccttttgtctccagcttacatctagttggtaagatacatttagcagctctccataagaaattcctgaccctttgaggagttctaactttccaaatg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46034354 |
aattccttttgtctccagcttacatctagttggtaagatacatttagcagctctccataagaaattcctgaccctttgaggagttctaactttccaaatg |
46034255 |
T |
|
| Q |
118 |
gccttccacataccggtgttacacattactgatgcttcaggggtgcctcgtaatgtctcttccttgagcagatggtatgctgatcgaacggagtattgac |
217 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46034254 |
gccttctacataccggtgttacacgttactgatgcttcaggggtgcctcgtaatgtctcttccttgagcagatggtatgctgatcgaacggagtattgac |
46034155 |
T |
|
| Q |
218 |
cattcctttcccaattccaaaccttcttatcctcgggcagtctccatgaaataggaatgttgagaatttgattggcttcgaaagcattgaaactatgcag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
46034154 |
cattcctttcccaattccaaaccttcttatcctcgggcagtctccatgaaataggaatgttgagaatttggttggcttcgaaagcattgaaactatgcag |
46034055 |
T |
|
| Q |
318 |
cacaagttcttttttccattgtttcaaatcaacatcaattaaatctgctacaacagcatcctcatttaaattgaagactgggctccacaccttgaagctc |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||| |
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|
| T |
46034054 |
cacaagttcttttttccattgtttcaaatcaacatcaattaaatctgctacaacaacatcctcatttaaattgtagactgggctctacaccttgaagctt |
46033955 |
T |
|
| Q |
418 |
gacagttcaggaagccaagggtctttccagattttaacttgttgcccattaccaatcgaccatctccatccgagatcaatcacagatttagcattcatca |
517 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
46033954 |
gacagttcaggaagccaaaggtctttccaaattttaactt-ttgcccattaccaatcgaccatctccatccgagatcaattacagatttagcattcatca |
46033856 |
T |
|
| Q |
518 |
aactgcgccaagcatagctgggctggtagccaatttgagcatccaaaaaacatgatctggaaaagtacctactcttgaacacccgagaaaggagggagtg |
617 |
Q |
| |
|
|||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46033855 |
aactacaccaagcatagctgggctggcagccaatttgagcatccaaaaaacatgatctggcaaagtacctactcttgaacacccgagaaaggagggagtg |
46033756 |
T |
|
| Q |
618 |
ttcgttgttcatgagtcgccaacattgcttccctagaagcgccttgttaaaatcactgaagcctccgaagccaagtcctcctttgctt |
705 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
46033755 |
ttcgttgttcatgagtcgccaacattgcttccctagaagtgccttgttaaaatcactgaagcctctgaagccaagtcctcctttgctt |
46033668 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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