View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11874_low_10 (Length: 504)
Name: NF11874_low_10
Description: NF11874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11874_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-116; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 16926789 - 16927021
Alignment:
| Q |
1 |
tggtgctattgttgtcaaagaacatgttccatttaattgtcttgaaaaagtaggaggttggagatcaaaatttctcaacaaattgcctagtgaatgttat |
100 |
Q |
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| T |
16926789 |
tggtgctattgttgtcaaagaacatgttccatttaattgtcttgaaaaagtaggaggttggggatcaaaatttctcaacaaattgcctagtgaatgttat |
16926888 |
T |
|
| Q |
101 |
ggtggaaaaaataaggattattcaaatagcatgagtattgttattccaggtgagattcatggtggacctaaaagtagagatggtgggccagggccatcta |
200 |
Q |
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| T |
16926889 |
ggtggaaaaaatgaggattattcaaatagcatgaatattgttattccaggtgagattcatggtggacctaaaagtagagatggtgggccagggccatctg |
16926988 |
T |
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| Q |
201 |
gtcttatagatagatggaaatctggttgatgtt |
233 |
Q |
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| T |
16926989 |
gtcttatagatagatggaaatctggtggatgtt |
16927021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 306 - 450
Target Start/End: Original strand, 16927018 - 16927161
Alignment:
| Q |
306 |
tgttccaagaagatgagcatggagactgcaagacacttgatatagtttctcaggttagttaatcttcaatatgtagtagtttatccttgttctctttgag |
405 |
Q |
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| T |
16927018 |
tgttccaagaagatgagcatggagactgcaagacacttgatatagtttctcaggtaagttaatcttcaatatgtagtagtttatccttgttctctttgag |
16927117 |
T |
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| Q |
406 |
ctgcttacacctatgaagtacagatactctttggattatgtgtgt |
450 |
Q |
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| T |
16927118 |
atgctta-acctatgaagcacggacgctctttggattatgcgtgt |
16927161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 466 - 504
Target Start/End: Original strand, 16927165 - 16927203
Alignment:
| Q |
466 |
gtgtcggatatgttcgtatctgacgccgacatatataat |
504 |
Q |
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| T |
16927165 |
gtgtcggatatgttcgtatctgacaccaacatatataat |
16927203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 467
Target Start/End: Original strand, 8039764 - 8039815
Alignment:
| Q |
416 |
ctatgaagtacagatactctttggattatgtgtgtcccggtgtcagacatgt |
467 |
Q |
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| T |
8039764 |
ctatgaagcacagatactcttcggattaagcgtgtcccggtgtcggacatgt |
8039815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 414 - 468
Target Start/End: Original strand, 38464311 - 38464365
Alignment:
| Q |
414 |
acctatgaagtacagatactctttggattatgtgtgtcccggtgtcagacatgtg |
468 |
Q |
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| T |
38464311 |
acctatgaagcacagacactcctcggattaggtgtgtcccggtgtcggacatgtg |
38464365 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 466
Target Start/End: Complemental strand, 39342563 - 39342511
Alignment:
| Q |
414 |
acctatgaagtacagatactctttggattatgtgtgtcccggtgtcagacatg |
466 |
Q |
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| T |
39342563 |
acctatgaagtagagacactccttggattaggcgtgtcccggtgtctgacatg |
39342511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 471
Target Start/End: Complemental strand, 12696446 - 12696393
Alignment:
| Q |
418 |
atgaagtacagatactctttggattatgtgtgtcccggtgtcagacatgtgtcg |
471 |
Q |
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| T |
12696446 |
atgaagcacagacactccttggataaggtgtgtcccggtgtcagacacgtgtcg |
12696393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 415 - 471
Target Start/End: Complemental strand, 8343447 - 8343391
Alignment:
| Q |
415 |
cctatgaagtacagatactctttggattatgtgtgtcccggtgtcagacatgtgtcg |
471 |
Q |
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| T |
8343447 |
cctatgaagcacagacactcttcggattaggcgtgtcccggtgtcggacacgtgtcg |
8343391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 464
Target Start/End: Complemental strand, 17876289 - 17876237
Alignment:
| Q |
412 |
acacctatgaagtacagatactctttggattatgtgtgtcccggtgtcagaca |
464 |
Q |
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| T |
17876289 |
acacctatgaagcacagacactccttggattaggtgtgtcctggtgtcggaca |
17876237 |
T |
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