View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11874_low_11 (Length: 501)
Name: NF11874_low_11
Description: NF11874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11874_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 14 - 496
Target Start/End: Complemental strand, 14209655 - 14209175
Alignment:
| Q |
14 |
ataagagagttaagtagtagagtaataaggtggtcacgagtggttaaatttgactctactttagnnnnnnncttcacagaaaccttggttattttttaac |
113 |
Q |
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| T |
14209655 |
ataagagagttaagtagtagagtaataaggtggtcacgagtgattaaatttgactctactttagtttttttcttcacagaaaccttggttattttttaac |
14209556 |
T |
|
| Q |
114 |
taatcgtttatttatttaatctcttttcaataattaaaagctcgacttccttgaaaagaaaataaaagcagggttagataattttatcttaattttaaaa |
213 |
Q |
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| T |
14209555 |
taatcgtttatttatttaatctcttttcaataattaaaagctcgacttccttgaaaagaaaataaaagcagggttagataattttatcttaattttaaaa |
14209456 |
T |
|
| Q |
214 |
atattgttttcttacttataaaatatgaattatgtctctaatatagcgattaannnnnnnnnnnnnnngaaagatagtgattaacttttatgtgtaaaac |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |
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| T |
14209455 |
atattgttttcttacttataaaatatgaattatgtctctaatatagtgattaa---atttttttttttgaaagatagtgattaacttttatgtgtaaaac |
14209359 |
T |
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| Q |
314 |
ttccctataaaaaatacatttacgtgtaaaactgtttaactttaagaattcacgacttatcataa-nnnnnnnnnnatacagatctgtaaatattttaaa |
412 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
14209358 |
ttcccgataaaaaatacatttacgtgtaaaactgtttaactttaagaattcacgatttatcataatttttttttgtatacagatctgtaaatattttaaa |
14209259 |
T |
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| Q |
413 |
gaggaaatatctggtttggtccttaaaattgcaagagcaagtcattttagtcaacaatttacagacaaaatcatctctgcttct |
496 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
14209258 |
gaggaaatatctggtttggtccttaaaatcgtaagagcaagtcattttagtcaacaatttatagacaaaatcatctctgattct |
14209175 |
T |
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