View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11874_low_13 (Length: 480)
Name: NF11874_low_13
Description: NF11874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11874_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 11 - 465
Target Start/End: Complemental strand, 28226003 - 28225549
Alignment:
| Q |
11 |
cagagaccaaaagatcatccagtgtagcttgttcaagcatcccaccaatcaatttttccagttcagttctgcaacctttactcaaaccaaacctagaaac |
110 |
Q |
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| T |
28226003 |
cagagaccaaaagatcatccagtgtagcttgttcaagcatcccaccaatcaatttttccagttcagttctgcaacctttactcaaaccaaacctagaaac |
28225904 |
T |
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| Q |
111 |
aatccttaatacccaaaaaagtcctctgcaagtgaagtttttcttaccaacaaatatgactccataagcagctgtttccgcaagagcggcatattcaccg |
210 |
Q |
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| T |
28225903 |
aatccttaatacccaaaaaagtcctctgcaagtgaagtttttcttaccaacaaatatgactccataagcagctgtttccgcaagagcggcatattcaccg |
28225804 |
T |
|
| Q |
211 |
ctgcttctgcaatcaacagctcttgtttgagtagctgttttcagatattgcaacagaaatcttgtaaagattaagttgttgctatcagctttgtatgact |
310 |
Q |
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| T |
28225803 |
ctgcttctgcaatcaacagctcttgtttgagtagctgttttcagatattgcaacagaaatcttgtaaagattaagttgttgctatcagctttgtatgact |
28225704 |
T |
|
| Q |
311 |
gaatacactgaaatagtttctcaattatctttggaggcaaagttgccaaatcctcaaaccaccatgctttgcttggcagagttgacttgattttttctgg |
410 |
Q |
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| T |
28225703 |
gaatacactgaaatagtttctcaattatctttggaggcaaagtcgccaaatcctcaaaccaccatgctttgcttggcagagttgacttgattttttctgg |
28225604 |
T |
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| Q |
411 |
tgtagtttgtgttgaagaagagaatctcttggcagaattgctttccggtgaagac |
465 |
Q |
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| T |
28225603 |
tgtagtttgtgttgaagaagagaatctcttggcagaattactttccggtgaagac |
28225549 |
T |
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Back To:
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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 188
Target Start/End: Original strand, 13040643 - 13040809
Alignment:
| Q |
22 |
agatcatccagtgtagcttgttcaagcatcccaccaatcaatttttccagttcagttctgcaacctttactcaaaccaaacctagaaacaatccttaata |
121 |
Q |
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|||||||||| ||| |||| |||| ||| ||||| |||||||| |||| |||| |||| ||| ||||||| | |||||| | || | |||||||| | |
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| T |
13040643 |
agatcatccaatgttgctttatcaaacattccacctatcaatttctccatttcatttctacaatctttacttattccaaactttgataaaatccttagca |
13040742 |
T |
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| Q |
122 |
cccaaaaaagtcctctgcaagtgaagtttttcttaccaacaaatatgactccataagcagctgtttc |
188 |
Q |
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| T |
13040743 |
cacaaaaaaggcctctacatgaaaaattcttgtcaccaacatttatgactccatgagcagctgtttc |
13040809 |
T |
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