View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11874_low_14 (Length: 434)
Name: NF11874_low_14
Description: NF11874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11874_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 8 - 418
Target Start/End: Original strand, 43796348 - 43796758
Alignment:
| Q |
8 |
aagcatagggtggccaccggagatctcactttcttaagaagaaactaaatcatcatccacaaaaggtaagaagccctttttcaatacaaggtaataataa |
107 |
Q |
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| T |
43796348 |
aagcattgggtggccaccggagatctcactttcttaagaagaaactaaatcatcatccacaaaaggtaaaaagccctttttcaatacaaggtaataataa |
43796447 |
T |
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| Q |
108 |
tagggctagttttgatgattatgatgatgaagaagaaattggtggcataaagaaaccgatcaagaaaccaacttgttctatctgcgagaagaagtttcca |
207 |
Q |
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| T |
43796448 |
tagggctagttttgatgattatgatgatgaagaagaaattggtggcataaagaaaccgatcaagaaaccaacttgttctatctgcgagaagaagtttcca |
43796547 |
T |
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| Q |
208 |
accaagaatgctttgtatggtcacatgaggtctcacccgaatagagattttaaaggacttaatcctcccactgaatatcataaagaagatcaagatgatg |
307 |
Q |
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| T |
43796548 |
accaagaatgctttgtatggtcacatgaggtctcacccgaatagagattttaaaggacttaatcctcccactgaatatcataaagaagatcaagatgatg |
43796647 |
T |
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| Q |
308 |
gtgatttatctttgccaaaatggcagaagagagatagaagaggtagaaagtgtattggtagtgtcgaggcggctgcaaatcttttgcaccttcgttatga |
407 |
Q |
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| T |
43796648 |
gtgatttatctttgccaaaatggcagaagagagatagaagaggtagaaagtgtattggtagtgtcgaggcggctgcaaatcttttgcaccttcgttatga |
43796747 |
T |
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| Q |
408 |
caagaactttt |
418 |
Q |
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| T |
43796748 |
caagaactttt |
43796758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 22 - 123
Target Start/End: Original strand, 43796086 - 43796187
Alignment:
| Q |
22 |
caccggagatctcactttcttaagaagaaactaaatcatcatccacaaaaggtaagaagccctttttcaatacaaggtaataataatagggctagttttg |
121 |
Q |
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| T |
43796086 |
caccgcagatctcactttcttaaaaagaaacttaatcatcgttcacaaaaggtaaaaacccctctctcaatacaaggtagttataatagggctagttttg |
43796185 |
T |
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| Q |
122 |
at |
123 |
Q |
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|| |
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| T |
43796186 |
at |
43796187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 169 - 235
Target Start/End: Complemental strand, 28847414 - 28847348
Alignment:
| Q |
169 |
aagaaaccaacttgttctatctgcgagaagaagtttccaaccaagaatgctttgtatggtcacatga |
235 |
Q |
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| T |
28847414 |
aagaaacaaacttgttatatttgcgagaacaagtttccaatcaagaatgttttttatggtcacatga |
28847348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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