View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11874_low_16 (Length: 429)
Name: NF11874_low_16
Description: NF11874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11874_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 414
Target Start/End: Complemental strand, 44636047 - 44635630
Alignment:
| Q |
1 |
acccttgaacctgagaaacagatccttctcaataaccacaccgaggagcatttcaccgccggtgacatagtccgtgacatcattatcggtgcctctgacg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44636047 |
acccttgaacctgagaaacagatccttctcaataaccacactgaggagcatttcaccgccggtgacatagtccgtgacatcattatcggtgcctctgacg |
44635948 |
T |
|
| Q |
101 |
gactcactgttccattcgctcttgctgccggtctctctggcgccaatgtcgcctcttccgtcatcctcactgcaggcatagctgaagttgctgcaggcgc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44635947 |
gactcactgttccattcgctcttgctgccggtctctctggcgccaatgttgcctcttccgtcatcctcactgcaggcatagccgaagttgctgcaggcgc |
44635848 |
T |
|
| Q |
201 |
catctccatgggtctcggagggtactttat-cttt--nnnnnnnnttagttcaaaaagttttacacttttgatgattttcacagcattcaattttgctca |
297 |
Q |
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|||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
44635847 |
catctccatgggtctcggagggtactttatactttaaaaaaaaattaagttcaaaaagttttacacttttgatgattttcaaagcattcaattttgctca |
44635748 |
T |
|
| Q |
298 |
c-annnnnnnnactatcaagaattgaaactaacgttgcattgtgttgtgcagttatttggcagcaaaaagtgaagctgatcattacaatagagaattgaa |
396 |
Q |
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| | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44635747 |
ctattttttttactatcaagaattgaaactaacgttgcattgtcttgtgcagttatttggcagcaaaaagtgaagctgatcattacaatagagaattgaa |
44635648 |
T |
|
| Q |
397 |
aagggagcaagaagaaat |
414 |
Q |
| |
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|||||||||||||||||| |
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| T |
44635647 |
aagggagcaagaagaaat |
44635630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 44624796 - 44624575
Alignment:
| Q |
3 |
ccttgaacctgagaaacagatccttctcaataaccacaccgaggagcatttcaccgccggtgacatagtccgtgacatcattatcggtgcctctgacgga |
102 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||| || |||| |||||||| ||||| || |||||||||||||| || || | || || || |
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| T |
44624796 |
ccttgaacctgagaaacagagccttctcaatcgccacactgaaaagcacttcaccgcgggtgaaatcgtccgtgacatcatcattggcgtttccgatggc |
44624697 |
T |
|
| Q |
103 |
ctcactgttccattcgctcttgctgccggtctctctggcgccaatgtcgcctcttccgtcatcctcactgcaggcatagctgaagttgctgcaggcgcca |
202 |
Q |
| |
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||||| || || ||||| || || |||||||||||||||||||||| | |||||| || |||||||||| ||||| || ||||| || || ||||||| |
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| T |
44624696 |
ctcaccgtccctttcgccctcgccgccggtctctctggcgccaatgctacttcttccatcgtcctcactgctggcatcgccgaagtcgccgccggcgcca |
44624597 |
T |
|
| Q |
203 |
tctccatgggtctcggagggta |
224 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
44624596 |
tctccatgggtctcggagggta |
44624575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 339 - 414
Target Start/End: Complemental strand, 44624493 - 44624418
Alignment:
| Q |
339 |
tgttgtgcagttatttggcagcaaaaagtgaagctgatcattacaatagagaattgaaaagggagcaagaagaaat |
414 |
Q |
| |
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||||||| || |||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44624493 |
tgttgtgaaggtatttggctgcaaaaggtgaagctgatcattacaatagagaattgaaaagggaacaagaagaaat |
44624418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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