View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11874_low_17 (Length: 424)
Name: NF11874_low_17
Description: NF11874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11874_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 60 - 407
Target Start/End: Complemental strand, 17545026 - 17544670
Alignment:
| Q |
60 |
aaagttcaaactgttaagatgtgtttataaacaatggaattagtaaattaaaaagtggaaaacaagcatgttacaaaccttatccttgaaaccaagtgaa |
159 |
Q |
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| T |
17545026 |
aaagttcaaactgttaagatgtgtatataaacaatggaattagtaaataaaaaaatggaaatcaagcatgtcacaaaccttatccttgaaaccaagtgaa |
17544927 |
T |
|
| Q |
160 |
agcatttcatcaacctcatccataacaaacatctttatgcaatccaggcgagtacgccccctttgcagcacgccatacacattccccggagtaccaacaa |
259 |
Q |
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| T |
17544926 |
agcatttgatcaacctcatccataacaaacatctttatgcaatctaggcgagtacgccccctctgcagcatgtcatacacacacctcggagtaccaacaa |
17544827 |
T |
|
| Q |
260 |
taatgtgcacaccacctttgaaaatgaattgatcatccat---------gtcatacacacgcggagcaccttcaacaatgtaactgttataaccaacttt |
350 |
Q |
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| T |
17544826 |
taatgtgaacaccacctttgaaaatgaattgaccatccatgtcaatgatgtcatacacattcgaagtaccttcaacaatgtaactgttataaccaacttt |
17544727 |
T |
|
| Q |
351 |
gagaaagctctgacgatcctccttcggaacacttgtccccccgacacatgcatgaat |
407 |
Q |
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| T |
17544726 |
gagaaagcgctgacgatcctccttcggaacacttgtccccccgacacatgcatgaat |
17544670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 17545163 - 17545102
Alignment:
| Q |
1 |
tccaacctgaatttcagagggaagtagcttgaagatttcatcaatctgcaacaccaatcaaa |
62 |
Q |
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| T |
17545163 |
tccaacctgaattttgcatggtagtagcttgaagatttcatcgatctgcaacaccaatcaaa |
17545102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 79 - 200
Target Start/End: Original strand, 6250408 - 6250531
Alignment:
| Q |
79 |
tgtgtttataaacaatggaattagtaaattaaaaag-tggaaaacaagcatgtt-acaaaccttatccttgaaaccaagtgaaagcatttcatcaacctc |
176 |
Q |
| |
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|||||||| |||||||||||| |||||| | ||||| ||||||| ||||| || || |||| ||||||||||||| ||||||||||||||||| | || |
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| T |
6250408 |
tgtgtttacaaacaatggaataagtaaagtcaaaaggtggaaaatgagcatattgacgtacctgatccttgaaaccacgtgaaagcatttcatcagcttc |
6250507 |
T |
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| Q |
177 |
atccataacaaacatctttatgca |
200 |
Q |
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| T |
6250508 |
atccagaacaaacatctttatgca |
6250531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 58 - 185
Target Start/End: Original strand, 6241469 - 6241601
Alignment:
| Q |
58 |
tcaaagttcaaactgttaagatgtgtttataaacaatggaattagtaaattaaa---aagtggaaaacaagcatgt--tacaaaccttatccttgaaacc |
152 |
Q |
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||||||||||||||| ||||||||||||||||||||| |||| ||||| |||| || |||||| |||| || | ||||||||| |||| |||| | |
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| T |
6241469 |
tcaaagttcaaactgataagatgtgtttataaacaatataatttgtaaagtaaaaacaaatggaaatcaagtatatcgaacaaaccttttcctcgaaatc |
6241568 |
T |
|
| Q |
153 |
aagtgaaagcatttcatcaacctcatccataac |
185 |
Q |
| |
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| T |
6241569 |
acatgaaagcatttcatcaacctcatccataac |
6241601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 203
Target Start/End: Complemental strand, 42718055 - 42717994
Alignment:
| Q |
142 |
tccttgaaaccaagtgaaagcatttcatcaacctcatccataacaaacatctttatgcaatc |
203 |
Q |
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|||||||||||| ||||||||||||||||| | ||||||| ||||||||| || |||||||| |
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| T |
42718055 |
tccttgaaaccacgtgaaagcatttcatcagcttcatccaaaacaaacattttaatgcaatc |
42717994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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