View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11874_low_18 (Length: 418)
Name: NF11874_low_18
Description: NF11874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11874_low_18 |
 | |
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| [»] scaffold0572 (1 HSPs) |
| | |
|
| [»] scaffold0127 (2 HSPs) |
| | |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 106 - 410
Target Start/End: Complemental strand, 20971356 - 20971052
Alignment:
| Q |
106 |
taatatggatgacaaatatgcaatagctactaggaaatcatacatatatattcttcaatttgccgtttctttgggttatgaaattttcctccatcactat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20971356 |
taatatggatgacaaatatgcaatagctactaggaaatcatacatatacatacttcaatttgccgtttctttgggttatgaaattttcctccatcactat |
20971257 |
T |
|
| Q |
206 |
gtatgaaatattcattcatatgcttacatcttatgtcattgcacttgcacctgttcagttctttattttgatagtatcatctataaagaaagtaatctga |
305 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20971256 |
atatggaatattcattcatattcttacatcttatgtcattgcacttgcacctgttcagttctttattttgatagtatcatctataaagaaagtaatctga |
20971157 |
T |
|
| Q |
306 |
aggatctggtgaaggaaatactggaatattttcaatttcttcgtgaattttttgccaatttgttaattgtttgttggcatcacttgtttacatatctgtg |
405 |
Q |
| |
|
||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||| |
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|
| T |
20971156 |
aggatatggtgaaggagatactgaaatattttcaatttcttcgtgaattttttgccaatctgtttattgtttgttggcatcacttgtttacatatttgtg |
20971057 |
T |
|
| Q |
406 |
ctcct |
410 |
Q |
| |
|
|||| |
|
|
| T |
20971056 |
ttcct |
20971052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 126 - 297
Target Start/End: Complemental strand, 20973566 - 20973403
Alignment:
| Q |
126 |
caatagctactaggaaatcatacatatatattcttcaatttgccgtttctttgggttatgaaattttcctccatcactatgtatgaaatattcattcata |
225 |
Q |
| |
|
|||||||||||||||||||||||| || || |||||||||| |||||||||||| ||||||||||||||||| |||| |||| ||||| |||||||| |
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| T |
20973566 |
caatagctactaggaaatcatacagctacatacttcaatttgttgtttctttgggtcatgaaattttcctccataacta--tatggaatatacattcata |
20973469 |
T |
|
| Q |
226 |
tgcttacatcttatgtcattgcacttgcacctgttcagttctttattttgatagtatcatctataaagaaag |
297 |
Q |
| |
|
||||||| |||||||||| ||||||| |||||||||||||| ||| || |||||||||||| |||| |
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|
| T |
20973468 |
tgcttacttcttatgtca------atgcacctattcagttctttattatgaaagcatcatctataaataaag |
20973403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 250 - 369
Target Start/End: Complemental strand, 20981664 - 20981545
Alignment:
| Q |
250 |
ttgcacctgttcagttctttattttgatagtatcatctataaagaaagtaatctgaaggatctggtgaaggaaatactggaatattttcaatttcttcgt |
349 |
Q |
| |
|
|||||| |||||| ||||||||||||| | ||||||||||||| |||| || ||||||||| ||||||||||||||||| | ||||||||||||||| | |
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|
| T |
20981664 |
ttgcacttgttcacttctttattttgaaaatatcatctataaataaagaaaactgaaggatgtggtgaaggaaatactgaatgattttcaatttcttcat |
20981565 |
T |
|
| Q |
350 |
gaattttttgccaatttgtt |
369 |
Q |
| |
|
||||| ||||||||| |||| |
|
|
| T |
20981564 |
gaattctttgccaatgtgtt |
20981545 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 207 - 386
Target Start/End: Original strand, 32598009 - 32598182
Alignment:
| Q |
207 |
tatgaaatattcattcatatgcttacatcttatgtcattgcacttgcacctgttcagttctttattttgatagtatcatctataaagaaagtaatctgaa |
306 |
Q |
| |
|
|||| ||||| |||||| ||||||||||||| |||||| |||| ||||| |||||||||||||| ||||||||||||||| |||| |||||||| |
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| T |
32598009 |
tatggaatatacattcacatgcttacatcttgtgtcatggcac------ctgttacgttctttattttgaaagtatcatctataaataaagaaatctgaa |
32598102 |
T |
|
| Q |
307 |
ggatctggtgaaggaaatactggaatattttcaatttcttcgtgaattttttgccaatttgttaattgtttgttggcatc |
386 |
Q |
| |
|
|| | |||||||||||||| || || |||||||||||||| ||| || ||||||||| |||| || ||| |||||||| |
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|
| T |
32598103 |
ggttgtggtgaaggaaatattgaaagattttcaatttcttaatgatttctttgccaatgtgtttgttatttattggcatc |
32598182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 105 - 200
Target Start/End: Complemental strand, 20981766 - 20981671
Alignment:
| Q |
105 |
ctaatatggatgacaaatatgcaatagctactaggaaatcatacatatatattcttcaatttgccgtttctttgggttatgaaattttcctccatc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | || || |||||| ||||| ||||||||||| |||||||||| ||||||| |
|
|
| T |
20981766 |
ctaatatggatgacaaatatgcaatagctactaggaaatcatagagttacatacttcaacttgccatttctttgggtcatgaaattttgctccatc |
20981671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 20971421 - 20971376
Alignment:
| Q |
21 |
cagctagtcttttggcaatataagttaaacactatagttaattatc |
66 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20971421 |
cagctagtattttggcaatataagttaaacactatagttaattatc |
20971376 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 31966331 - 31966396
Alignment:
| Q |
114 |
atgacaaatatgcaatagctactaggaaatcatacatatatattcttcaatttgccgtttctttgg |
179 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||| ||||| ||||||||||||||||| |||| |
|
|
| T |
31966331 |
atgacagatatgcaatagctactgggaaatcatacagctatatacttcaatttgccgtttcattgg |
31966396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 114 - 181
Target Start/End: Original strand, 31959341 - 31959408
Alignment:
| Q |
114 |
atgacaaatatgcaatagctactaggaaatcatacatatatattcttcaatttgccgtttctttgggt |
181 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||| || || ||||||||||||||||| |||||| |
|
|
| T |
31959341 |
atgacagatatgcaatagctactgggaaatcatacagctacatccttcaatttgccgtttcattgggt |
31959408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0572 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: scaffold0572
Description:
Target: scaffold0572; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 105 - 410
Target Start/End: Complemental strand, 7211 - 6902
Alignment:
| Q |
105 |
ctaatatggatgacaaatatgcaatagctactaggaaatcatacatatatattcttcaatttgccgtttctttgggttatgaaattttcctccatcacta |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7211 |
ctaatatggatgacaaatatgcaatagctactaggaaatcatacatatatatacttcaatttgccgtttctttgggttatgaaattttccttcatcacta |
7112 |
T |
|
| Q |
205 |
tgtatgaaatattcattcatatgcttacatcttatgtcattgcacttgcacctgttcagttctttattttgatagtatcatctataaagaaagtaatctg |
304 |
Q |
| |
|
| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7111 |
tatatggaatattcattcatatgcttacatctcatgtcattgcacttgcacctgttcagttctttattttgatagtatcatctataaagaaagtaatctg |
7012 |
T |
|
| Q |
305 |
aagg----atctggtgaaggaaatactggaatattttcaatttcttcgtgaattttttgccaatttgttaattgtttgttggcatcacttgtttacatat |
400 |
Q |
| |
|
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
7011 |
aaggatatatatggtgaaggaaatactggaatattttcaatttcttcgtgaattttttgccaatctgtttattgtttgttggcatcacttgtttacatat |
6912 |
T |
|
| Q |
401 |
ctgtgctcct |
410 |
Q |
| |
|
|||| |||| |
|
|
| T |
6911 |
ttgtgttcct |
6902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 105 - 410
Target Start/End: Original strand, 30381 - 30690
Alignment:
| Q |
105 |
ctaatatggatgacaaatatgcaatagctactaggaaatcatacatatatattcttcaatttgccgtttctttgggttatgaaattttcctccatcacta |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30381 |
ctaatatggatgacaaatatgcaatagctactaggaaatcatacatatatatacttcaatttgccgtttctttgggttatgaaattttccttcatcacta |
30480 |
T |
|
| Q |
205 |
tgtatgaaatattcattcatatgcttacatcttatgtcattgcacttgcacctgttcagttctttattttgatagtatcatctataaagaaagtaatctg |
304 |
Q |
| |
|
| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30481 |
tatatggaatattcattcatatgcttacatctcatgtcattgcacttgcacctgttcagttctttattttgatagtatcatctataaagaaagtaatctg |
30580 |
T |
|
| Q |
305 |
aagg----atctggtgaaggaaatactggaatattttcaatttcttcgtgaattttttgccaatttgttaattgtttgttggcatcacttgtttacatat |
400 |
Q |
| |
|
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
30581 |
aaggatatatatggtgaaggaaatactggaatattttcaatttcttcgtgaattttttgccaatctgtttattgtttgttggcatcacttgtttacatat |
30680 |
T |
|
| Q |
401 |
ctgtgctcct |
410 |
Q |
| |
|
|||| |||| |
|
|
| T |
30681 |
ttgtgttcct |
30690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 66
Target Start/End: Original strand, 30314 - 30342
Alignment:
| Q |
38 |
atataagttaaacactatagttaattatc |
66 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
30314 |
atataagttaaacactatagttaattatc |
30342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 105 - 410
Target Start/End: Complemental strand, 41403954 - 41403645
Alignment:
| Q |
105 |
ctaatatggatgacaaatatgcaatagctactaggaaatcatacatatatattcttcaatttgccgtttctttgggttatgaaattttcctccatcacta |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41403954 |
ctaatatggatgacaaatatgcaatagctactaggaaatcatacatatatatacttcaatttgccgtttctttgggttatgaaattttccttcatcacta |
41403855 |
T |
|
| Q |
205 |
tgtatgaaatattcattcatatgcttacatcttatgtcattgcacttgcacctgttcagttctttattttgatagtatcatctataaagaaagtaatctg |
304 |
Q |
| |
|
| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41403854 |
tatatggaatattcattcatatgcttacatctcatgtcattgcacttgcacctgttcagttctttattttgatagtatcatctataaagaaagtaatctg |
41403755 |
T |
|
| Q |
305 |
aagg----atctggtgaaggaaatactggaatattttcaatttcttcgtgaattttttgccaatttgttaattgtttgttggcatcacttgtttacatat |
400 |
Q |
| |
|
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
41403754 |
aaggatatatatggtgaaggaaatactggaatattttcaatttcttcgtgaattttttgccaatctgtttattgtttgttggcatcacttgtttacatat |
41403655 |
T |
|
| Q |
401 |
ctgtgctcct |
410 |
Q |
| |
|
|||| |||| |
|
|
| T |
41403654 |
ttgtgttcct |
41403645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 66
Target Start/End: Complemental strand, 41404021 - 41403993
Alignment:
| Q |
38 |
atataagttaaacactatagttaattatc |
66 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
41404021 |
atataagttaaacactatagttaattatc |
41403993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 257 - 308
Target Start/End: Complemental strand, 81775 - 81724
Alignment:
| Q |
257 |
tgttcagttctttattttgatagtatcatctataaagaaagtaatctgaagg |
308 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||| |||| |||||||||| |
|
|
| T |
81775 |
tgttcagttctttattacgagagtatcatctataaataaagaaatctgaagg |
81724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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