View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11874_low_19 (Length: 411)
Name: NF11874_low_19
Description: NF11874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11874_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 18221388 - 18221060
Alignment:
| Q |
1 |
acacttgacgagaaatacgtgatgggaatcgaatttgcaatcaaaacactttgtagaagcatctcagctaatgaatttgcagagaaaggaaactcatgga |
100 |
Q |
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| T |
18221388 |
acacttgacgagaaatacgtgatgggaatcgaatttgcaatcaaaacactttgtagaagcatctcagctaatgaatttgcagagaaaggaaactcatgga |
18221289 |
T |
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| Q |
101 |
gcttctgggcctctcctcctaagagcccagttatcaatgatgccgctactagtttggttcccaagcagggttcatgtttgtctgagatcaagttctctgg |
200 |
Q |
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| T |
18221288 |
gcttctgggcctctcctcctaagagcccagttatcaatgatgctgctactagtttggttcccaagcagggttcatgtttgtctgagatcaagttctctgg |
18221189 |
T |
|
| Q |
201 |
tatgatgcagtggggccaacgccggcaagttcggttcttgggccgtcatgaggagcaaaaggttgaacctttacctgtgattcggaaggaaaaaggtgtc |
300 |
Q |
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| T |
18221188 |
tatgatgcagtggggccaacgccggcaagttcggttcttgggccgtcatgaggagcaaaaggttgaacctttacctgtgattcagaaggaaaaaggtgtc |
18221089 |
T |
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| Q |
301 |
atttttaacgccagagtagggactattgt |
329 |
Q |
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| T |
18221088 |
atttttaaggccagagtagggactattgt |
18221060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 173; Significance: 7e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 44 - 276
Target Start/End: Complemental strand, 43013060 - 43012828
Alignment:
| Q |
44 |
aaacactttgtagaagcatctcagctaatgaatttgcagagaaaggaaactcatggagcttctgggcctctcctcctaagagcccagttatcaatgatgc |
143 |
Q |
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||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||| || |||| ||||||||||| ||||||||||||||||||||| |
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| T |
43013060 |
aaacactctgtagaagcatctcagctaacgaatttgctgagaaaggaaactcatggagtttttgggtctctcctcctatgagcccagttatcaatgatgc |
43012961 |
T |
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| Q |
144 |
cgctactagtttggttcccaagcagggttcatgtttgtctgagatcaagttctctggtatgatgcagtggggccaacgccggcaagttcggttcttgggc |
243 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
43012960 |
tgctactagtttggttcccaagcagggttcatgttggtctgagatcaaattcactggtatggtgcagtggggccaacgccaacaagttcggttcttgggg |
43012861 |
T |
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| Q |
244 |
cgtcatgaggagcaaaaggttgaacctttacct |
276 |
Q |
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| T |
43012860 |
cgtcatgaggagcaaaaggttgaacctttacct |
43012828 |
T |
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