View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11874_low_23 (Length: 351)
Name: NF11874_low_23
Description: NF11874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11874_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 27 - 336
Target Start/End: Original strand, 39854730 - 39855053
Alignment:
| Q |
27 |
tattttatggacaataattttgtggcgatcaatagttcattttgtgtatttttaaaaagttctgaaaatatgttttacgtgttgatttgtttacctaatc |
126 |
Q |
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| T |
39854730 |
tattttatggacaataattttgtggcgatcaatagttcattttgtgtatttttaaaaagttctgaaaatatgttttacgtgttgatttgtttacctaatc |
39854829 |
T |
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| Q |
127 |
ttcacct--------------aagaaatagttttgctaagtaatcagttcatcggccattctatatgcatgcatgtatatattatgattgatgaataata |
212 |
Q |
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| T |
39854830 |
ttcacctctttaatttgatctaagaaatagttttgctaagtaatgagttcatcggccattctatatgcatgcatgtatatattatgattgatgaataata |
39854929 |
T |
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| Q |
213 |
atgcaaataatttttactactttatttccacattaacgcaatcaccataacaccctttgctagttaatagttgacttatcggagaaagtatgattggata |
312 |
Q |
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| T |
39854930 |
atgcaaataatttttactactttatttccacattaacgcaatcaccataacaccctttgctagttaatagttgacttatcggagaaagtatgattggata |
39855029 |
T |
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| Q |
313 |
acttatcttgtcactagaaattag |
336 |
Q |
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| T |
39855030 |
acttatcttgtcactagaaattag |
39855053 |
T |
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