View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11874_low_25 (Length: 296)
Name: NF11874_low_25
Description: NF11874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11874_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 4 - 254
Target Start/End: Complemental strand, 47712305 - 47712058
Alignment:
| Q |
4 |
aaaagggaagagcacaccaatacagcattgaaagagctaatagtaaacaaaaatcaacatcgcacaatattttatcaaatagttttcttagatcatattg |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47712305 |
aaaagggaagagcacaccaatacagcattgaaagagctaatagtaaacaaaaatcaacatcgcacaatattttatcaaatagttttcttagatcatattg |
47712206 |
T |
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| Q |
104 |
aagtgcccatattttcttccttaatataaatctgtcagccaaatatgacttaccctttttccccattcatatgcttggtcaagcacatatgagcactcca |
203 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47712205 |
aagtgcccatattttc---cttaatataaatctgtcagccaaatatgacttaccctttttccccattcatatgcttggtcaagcacatatgagcactcca |
47712109 |
T |
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| Q |
204 |
tttcttcaaagctcattaaagtaaacaggaaggcaaacttttgttagatct |
254 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47712108 |
tttcttcaaagctcattaaagtaaacaggaaggcaaacttttgttagatct |
47712058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 4 - 215
Target Start/End: Complemental strand, 32886074 - 32885852
Alignment:
| Q |
4 |
aaaagggaagagcacaccaatacagcattgaaagagctaatag-taaacaaaaatcaacatcgcacaatattttatcaaatagttttcttagatcatatt |
102 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32886074 |
aaaagggaagagcacaccaatactccattgaaagagctaataggtaaacaaaaatcaacatcgcgcaatattttatcaaatagttttcttagatcatatt |
32885975 |
T |
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| Q |
103 |
gaagtgcccatattttcttcctt----------aatataaatctgtcagccaaatatgacttaccctttttccccattcatatgcttggtcaagcacata |
192 |
Q |
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| T |
32885974 |
gaagtgcccatattttccttaatatggaagagcaatataaatctgtcagccaaatctgacttaccctttttccccattcatatgcttggtcaagcagata |
32885875 |
T |
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| Q |
193 |
tgagcactccatttcttcaaagc |
215 |
Q |
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|||| |||||||||||||||||| |
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| T |
32885874 |
tgagtactccatttcttcaaagc |
32885852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 32885830 - 32885790
Alignment:
| Q |
214 |
gctcattaaagtaaacaggaaggcaaacttttgttagatct |
254 |
Q |
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| T |
32885830 |
gctcattaaagtaaacaggaaggcaaacttttgttagatct |
32885790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 24481624 - 24481563
Alignment:
| Q |
150 |
gacttaccctttttccccattcatatgcttggtcaagcacatatgagcactccatttcttca |
211 |
Q |
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||||||| ||||||||||||||||| ||| ||||||| | ||||||| |||||||||||||| |
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| T |
24481624 |
gacttactctttttccccattcataagctcggtcaaggagatatgagtactccatttcttca |
24481563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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