View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11874_low_28 (Length: 282)
Name: NF11874_low_28
Description: NF11874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11874_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 111 - 275
Target Start/End: Original strand, 47712372 - 47712536
Alignment:
| Q |
111 |
cttcacatctgtttgaaaggaacaatgttcccaatatggaggacaagaattttgggaactacactatttaattcatgaatacacatgttgagtccattag |
210 |
Q |
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| T |
47712372 |
cttcacatctgtttgaaaggaacaatgttcccaatatggaggacaagaattttgggaactacactatttaattcatgaatacacatattgagtccattag |
47712471 |
T |
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| Q |
211 |
ttctacacaaccctatgaacatgatacactttaatttggagatacaaatatttatgctacctctc |
275 |
Q |
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| T |
47712472 |
ttctacacaaccctatgaacatgatacactttaatttggagatacaaatatttatgctacctctc |
47712536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 9 - 65
Target Start/End: Original strand, 47712311 - 47712367
Alignment:
| Q |
9 |
atctgcctatgcttcaaccgaaggaagaatttgcaaactatttaatccattacttgg |
65 |
Q |
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| T |
47712311 |
atctgcctatgcttcaaccgaaggaagaatttgcaaactatttaatccattacttgg |
47712367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 68 - 259
Target Start/End: Original strand, 32886450 - 32886645
Alignment:
| Q |
68 |
aaaccgtgtgctaatgctcacatctttggactccttacatctacttcacatctgtttgaaaggaacaatgttcccaatatggaggacaagaattttggga |
167 |
Q |
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| T |
32886450 |
aaactgtgtgctaatgctcacatctttggactccttacatctacttcacttctgtttgaaaggaacaatgttcccaatatggaggacaagaattttggga |
32886549 |
T |
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| Q |
168 |
actacactatttaattcatgaata----cacatgttgagtccattagttctacacaaccctatgaacatgatacactttaatttggagatacaaat |
259 |
Q |
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| T |
32886550 |
actacactatttagttcatgaataaaaggagatattgagtccattagttctacacaaccctatcaacatgataaactttaatttggagatacaaat |
32886645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 71
Target Start/End: Original strand, 32886144 - 32886206
Alignment:
| Q |
9 |
atctgcctatgcttcaaccgaaggaagaatttgcaaactatttaatccattacttggggaaac |
71 |
Q |
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| T |
32886144 |
atctgcctatgcttcaaccgaaggaagaatttgcaaaccatttaatccattacttggagaaac |
32886206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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