View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11874_low_3 (Length: 616)
Name: NF11874_low_3
Description: NF11874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11874_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 537; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 1 - 605
Target Start/End: Complemental strand, 135068 - 134464
Alignment:
| Q |
1 |
cgaaccaaaaggtcttcatctctgggcagtcttcaatttttatttgccaacattgtggcatctcaatatagcaagggaaagagctttgaccgaaacattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
135068 |
cgaaccaaaaggtcttcatctctgggcagtcttcaatttttattcgccgacattgtggcatctcaatatagcaagggaaagagctttgaccgaaacattt |
134969 |
T |
|
| Q |
101 |
gaggctaggaagcttctgcagttcaataatcattaatttcgggaatttaattttagctttctgttgtacacaatcagtaggattgcaattattcccaatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
134968 |
gaggctaggaagcttctgcagttcaatcttcattaatttcgggaatttaattttagctttctgttgtacacaatcagtaggattgcaattattcccaatg |
134869 |
T |
|
| Q |
201 |
atctccttcatcttctggcattcatacacatcaattgacgacaaatttggaatgcttgtgagcacggaaacatccggaagaacatattccaaatcattgc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
134868 |
atctccttcatcttctggcattcatacacaccaattaaccacaaatttggaatgcttgtgagcacggaaacatccggaagaacatattccaaatcattgc |
134769 |
T |
|
| Q |
301 |
acttatagatgattatcatttgtaaacactcaaatccttgacaatggtttttccaaatgtgcttcagttttggaagagacttcaatattaagaacaatag |
400 |
Q |
| |
|
||| |||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||| |
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|
| T |
134768 |
actcatagatgattatcaattgtaaacaatcgaatccttgacaatggtttttccaaatgtgcttcagttttggaagagaaagcaattttaagaacactag |
134669 |
T |
|
| Q |
401 |
ctcccactgcaacatgctatcagttgattcaaatatctcttctaagtactcacattcattaacagagagtttctccaaatgtgagaataagtgcatcatg |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
134668 |
ctcccactgcaacatgctatcagttgattcaaatatctcttctaagtactcacattcattaacagagagtttctccaaatgtgataataagtgcatcatg |
134569 |
T |
|
| Q |
501 |
ttggatgggatgcaattcaatagcttgtgacagtttacaatgtcaaggtgtgttactcttttgatgtagccaagaagctcttcgtccatatctttaaacg |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
134568 |
ttggatgggatgcaattcaatagcttgtgacagtttacaatgtcaaggtgtgttactcttttgatgtagccaagaagctcttcgtccatatctttaaacg |
134469 |
T |
|
| Q |
601 |
tctct |
605 |
Q |
| |
|
||||| |
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|
| T |
134468 |
tctct |
134464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 178 - 548
Target Start/End: Complemental strand, 157409 - 157035
Alignment:
| Q |
178 |
taggattgcaattattcccaatgatctccttcatcttctggcattcatacacatcaattgacgacaaatttggaatgcttgtgagcacggaaacatccgg |
277 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| | || || ||||||||||||||||||||||||||||||||||| | |
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|
| T |
157409 |
taggattgtaattattcccaatgatctccttcatcttctggcattcatacacaccgataaaccacaaatttggaatgcttgtgagcacggaaacatccag |
157310 |
T |
|
| Q |
278 |
aagaacatattccaaatcattgcacttatagatgattatcatttgtaaacactcaaatccttgacaat----ggtttttccaaatgtgcttcagttttgg |
373 |
Q |
| |
|
|||||||||||||||||||||||| | | |||||||| || || ||||||||| ||||||||||||| | |||||||||||||||||||||||||| |
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|
| T |
157309 |
aagaacatattccaaatcattgcagtccttgatgattaacaattctaaacactcgaatccttgacaattaatgatttttccaaatgtgcttcagttttgg |
157210 |
T |
|
| Q |
374 |
aagagacttcaatattaagaacaatagctcccactgcaacatgctatcagttgattcaaatatctcttctaagtactcacattcattaacagagagtttc |
473 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||| ||||||||||| | ||| | |||| | |
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|
| T |
157209 |
aagagaaaacaattttaagaacaatagctcccactgcaacatgcgatcggttgatttaaatatctcttctaagcactcacattcaatcacaaatagttcc |
157110 |
T |
|
| Q |
474 |
tccaaatgtgagaataagtgcatcatgttggatgggatgcaattcaatagcttgtgacagtttacaatgtcaagg |
548 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
157109 |
ttcaaatgtgagaataagtgcatcatgttggatgggatgcaattcaatagcttgtgaaagtttacaatgtcaagg |
157035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 4 - 605
Target Start/End: Complemental strand, 34377560 - 34376968
Alignment:
| Q |
4 |
accaaaaggtcttcatctctgggcagtcttcaatttttatttgccaacattgtggcatctcaatatagcaagggaaagagctttgaccgaaacatttgag |
103 |
Q |
| |
|
|||||||||||||||||||||| ||||| | |||| ||| | |||| ||||||||||| |||||| |||||||||||| || |||||||||||| |
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|
| T |
34377560 |
accaaaaggtcttcatctctggacagtcattaattagtatccactcacatgctggcatctcaacgtagcaatggaaagagctttcactgaaacatttgag |
34377461 |
T |
|
| Q |
104 |
gctaggaagcttctgcagttcaataatcattaatttcgggaatttaattttagctttctgttgtacacaatcagtaggattgcaattattcccaatgatc |
203 |
Q |
| |
|
|||||||||||||| |||| ||| |||| | || ||||||||||| |||||||||||||||| ||||| |||||||||||||| |
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|
| T |
34377460 |
gctaggaagcttctttagtttaattttcatcagctttgggaatttaatcttagctttctgttgtaaacaat---------------tattcccaatgatc |
34377376 |
T |
|
| Q |
204 |
tccttcatcttctggcattcatacacatcaattgacgacaaatttggaatgcttgtgagcacggaaacatccggaagaacatattccaaatcattgcact |
303 |
Q |
| |
|
||||||||||||| ||||||| |||||| ||| ||| |||| |||||| |||||||| ||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
34377375 |
tccttcatcttctcgcattcagacacatgaatcgacatcaaacttggaaggcttgtgaccacggaaacatccggaatcacatattccaaatcattgcact |
34377276 |
T |
|
| Q |
304 |
tatagatgattatcatttgtaaacactcaaatcct------tgacaatggtttttccaaatgtgcttcagttttggaagagacttcaatattaagaacaa |
397 |
Q |
| |
|
| | ||| ||||| ||||||| || | || | | |||| ||| |||||||| ||||||||||||||||||||| | | ||| |||||| | |
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|
| T |
34377275 |
tcttgatccttatctcttgtaaatacccgaaccttaaagtttgaccatgatttttccagatgtgcttcagttttggaagacaatacaaatttaagacctc |
34377176 |
T |
|
| Q |
398 |
tagctcccactgcaacatgctatcagttgattcaaatatctcttctaagtactcacattcattaacagagagtttctccaaatgtgagaataagtgcatc |
497 |
Q |
| |
|
||| || |||||||| ||||||||| ||||||||||||||||| ||||| |||||||||| || || | || || || |||||||||||| |||||| |
|
|
| T |
34377175 |
tagttcacactgcaagatgctatcatttgattcaaatatctctactaagcactcacattctttcactgttagagacttcacatgtgagaataattgcatc |
34377076 |
T |
|
| Q |
498 |
atgttggatgggatgcaattcaatagcttgtgacagtttacaatgtcaaggtgtgttactcttttgatgtagccaagaagctcttcgtccatatctttaa |
597 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| ||||| | ||||||||||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
34377075 |
atgttggatgggatgcaattcaatagcttatgacagtttacaatctcaagcactattactcttttgatgtagccaagaagctcttcatccatatctctaa |
34376976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 4 - 605
Target Start/End: Original strand, 34549820 - 34550418
Alignment:
| Q |
4 |
accaaaaggtcttcatctctgggcagtcttcaatttttatttgccaacattgtggcatctcaatatagcaagggaaagagctttgaccgaaacatttgag |
103 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||| ||| | ||||| ||||||||||| ||||||||||||| |||||| || |||||||||||| |
|
|
| T |
34549820 |
accaaaaggtcttcatctctgggcagtcattaattactatcaactcacattttggcatctcaacatagcaagggaaatagctttcactgaaacatttgag |
34549919 |
T |
|
| Q |
104 |
gctaggaagcttctgcagttcaataatcattaatttcgggaatttaattttagctttctgttgtacacaatcagtaggattgcaattattcccaatgatc |
203 |
Q |
| |
|
|||||||||||||| ||| || | ||| | || |||||||| ||||||||||||||| ||||| |||||| ||||||| |
|
|
| T |
34549920 |
gctaggaagcttctctagtaatatttcctccaatattggaaatttaatcttagctttctgttgtgaacaat---------------tattcctaatgatc |
34550004 |
T |
|
| Q |
204 |
tccttcatcttctggcattcatacacatcaattgacgacaaatttggaatgcttgtgagcacggaaacatccggaagaacatattccaaatcattgcact |
303 |
Q |
| |
|
||||||||||||| ||||||| ||||| ||| ||| |||| |||||| |||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34550005 |
tccttcatcttctcgcattcagacacacgaatcgacaccaaacttggaaggcttgtgaccacggaaacatccggaatcacatattccaaatcattgcact |
34550104 |
T |
|
| Q |
304 |
tatagatgattatcatttgtaaacactcaaatcct------tgacaatggtttttccaaatgtgcttcagttttggaagagacttcaat---att---aa |
391 |
Q |
| |
|
| | ||| ||||| || ||||||| | || | | |||| ||| |||||||| ||||||||||||||||||||||| |||| ||| || |
|
|
| T |
34550105 |
tcttgatccttatctcttctaaacacccgaaccttaaagtttgaccatgatttttccatatgtgcttcagttttggaagagaaaacaattctatttctaa |
34550204 |
T |
|
| Q |
392 |
gaacaatagctcccactgcaacatgctatcagttgattcaaatatctcttctaagtactcacattcattaacagagagtttctccaaatgtgagaataag |
491 |
Q |
| |
|
|| | ||| || |||||||| ||||||||| ||||||||||||||||| ||||| |||||||||| || || | || || || |||||||||||| |
|
|
| T |
34550205 |
gacctctagttcacactgcaagatgctatcatttgattcaaatatctctactaagcactcacattctttcactgttagagacttcacatgtgagaataat |
34550304 |
T |
|
| Q |
492 |
tgcatcatgttggatgggatgcaattcaatagcttgtgacagtttacaatgtcaaggtgtgttactcttttgatgtagccaagaagctcttcgtccatat |
591 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| | | |||||||||||||| | ||||||||||||||||||||||| ||||||||| || |||| |
|
|
| T |
34550305 |
tgcatcatgttggatggaatgcaattcaatagcttgttaaactttacaatgtcaagatttgttactcttttgatgtagccaacaagctcttcatctatat |
34550404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 417 - 605
Target Start/End: Original strand, 15891058 - 15891246
Alignment:
| Q |
417 |
ctatcagttgattcaaatatctcttctaagtactcacattcattaacagagagtttctccaaatgtgagaataagtgcatcatgttggatgggatgcaat |
516 |
Q |
| |
|
|||||| ||||||||||||||||||||||| | ||||||| ||| ||| ||| || ||||||||||||||||||| |||| | |||||||||| |
|
|
| T |
15891058 |
ctatcatttgattcaaatatctcttctaagcccccacattctcgcacattgagaatctgcatatgtgagaataagtgcatcttgttcgctgggatgcaac |
15891157 |
T |
|
| Q |
517 |
tcaatagcttgtgacagtttacaatgtcaaggtgtgttactcttttgatgtagccaagaagctcttcgtccatatctttaaacgtctct |
605 |
Q |
| |
|
|||| ||||||||||| ||| |||||| | | |||||||||| |||||||| ||| ||||||||| | |||||| |||| |||||| |
|
|
| T |
15891158 |
tcaacagcttgtgacactttttaatgtcgatctttgttactcttctgatgtaggcaacaagctcttcattgatatctctaaatgtctct |
15891246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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