View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11874_low_34 (Length: 251)
Name: NF11874_low_34
Description: NF11874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11874_low_34 |
 | |
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| [»] scaffold0013 (1 HSPs) |
| | |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 13054494 - 13054269
Alignment:
| Q |
18 |
ccaccatcctctctttgtgtcgagagaagaaatttaacagctttacgaatcgcaacagaattggtataagtgtttccagcagctgctaaaccaccaagag |
117 |
Q |
| |
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|||||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||| ||||||| |
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| T |
13054494 |
ccaccatcctctctttgtgttgagagaagaaattgaacagctttacgaatcacaacagaattgctataagtctttccagcagctgctaaacctccaagag |
13054395 |
T |
|
| Q |
118 |
caaaataagtaccataaataaagcaaattccccaacttccataccatgaaccatcatctttttgtatatcttcaatgaatctaactgcattgcgaatgaa |
217 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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|
| T |
13054394 |
caaaataagtaccataaatgaagcaaattccccaacttccataccatgaaccatcatctttttgtgtatcttcaatgaatctaactgcattgtcaatgaa |
13054295 |
T |
|
| Q |
218 |
attctctatctctttcttcctatgct |
243 |
Q |
| |
|
|||||||||||| ||||||||||||| |
|
|
| T |
13054294 |
attctctatctcgttcttcctatgct |
13054269 |
T |
|
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Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 106017 - 105793
Alignment:
| Q |
18 |
ccaccatcctctctttgtgtcgagagaagaaatttaacagctttacgaatcgcaacagaattggtataagtgtttccagcagctgctaaaccaccaagag |
117 |
Q |
| |
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|||||||||||||| ||||| | ||||||||||||||||||||| ||||| ||| | ||||||||||||| || ||||||||||||||||||||||||| |
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| T |
106017 |
ccaccatcctctctctgtgttgtgagaagaaatttaacagctttgcgaatagcagcgcaattggtataagtcttgccagcagctgctaaaccaccaagag |
105918 |
T |
|
| Q |
118 |
caaaataagtaccataaataaagcaaattccccaacttccataccatgaaccatcatctttttgtatatcttcaatgaatctaactgcattgcgaatgaa |
217 |
Q |
| |
|
|||| ||| ||||||| | ||||||| |||||| ||||||||||||||||||| || ||||||||||||||||||||| |||||| | | ||||| |
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| T |
105917 |
caaaccaagaaccataagtgaagcaaactccccagtttccataccatgaaccatcggctgtttgtatatcttcaatgaatcgaactgcctcggagatgaa |
105818 |
T |
|
| Q |
218 |
attctctatctctttcttcctatgc |
242 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
105817 |
attctctatctctttcttcctatgc |
105793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 42 - 242
Target Start/End: Complemental strand, 166530 - 166330
Alignment:
| Q |
42 |
agaagaaatttaacagctttacgaatcgcaacagaattggtataagtgtttccagcagctgctaaaccaccaagagcaaaataagtaccataaataaagc |
141 |
Q |
| |
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||||||||||||||||| || ||||||| | || ||||||||||||| |||||||||||||||||||||||||||||||| || ||||||| |||||| |
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|
| T |
166530 |
agaagaaatttaacagccttgcgaatcgtagcacaattggtataagtctttccagcagctgctaaaccaccaagagcaaaccaacaaccataagtaaagc |
166431 |
T |
|
| Q |
142 |
aaattccccaacttccataccatgaaccatcatctttttgtatatcttcaatgaatctaactgcattgcgaatgaaattctctatctctttcttcctatg |
241 |
Q |
| |
|
||| |||||| ||||||||||||||||||| || ||||||||||||||||||||| |||||| | | ||||||||||||||||||||||||||||| |
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|
| T |
166430 |
aaactccccagtttccataccatgaaccatcggctgtttgtatatcttcaatgaatcgaactgcctcggagatgaaattctctatctctttcttcctatg |
166331 |
T |
|
| Q |
242 |
c |
242 |
Q |
| |
|
| |
|
|
| T |
166330 |
c |
166330 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 41 - 242
Target Start/End: Original strand, 90777 - 90978
Alignment:
| Q |
41 |
gagaagaaatttaacagctttacgaatcgcaacagaattggtataagtgtttccagcagctgctaaaccaccaagagcaaaataagtaccataaataaag |
140 |
Q |
| |
|
||||||||||||||||||||||||||| ||| || |||| |||||| | || |||||||||||||||||||||||||| || ||| ||||||| | || |
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|
| T |
90777 |
gagaagaaatttaacagctttacgaatagcatcacaattagtataattcttgccagcagctgctaaaccaccaagagcgaaccaagaaccataagtgaaa |
90876 |
T |
|
| Q |
141 |
caaattccccaacttccataccatgaaccatcatctttttgtatatcttcaatgaatctaactgcattgcgaatgaaattctctatctctttcttcctat |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||| |||||||||| ||| || || |||||||| |||||||||| |
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|
| T |
90877 |
caaattccccaacttccataccatgaaccatcagttttttgtgtatcttcaaggaatcgaactgcattggcaatcaagttatctatctcgttcttcctat |
90976 |
T |
|
| Q |
241 |
gc |
242 |
Q |
| |
|
|| |
|
|
| T |
90977 |
gc |
90978 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 41 - 243
Target Start/End: Original strand, 12135900 - 12136102
Alignment:
| Q |
41 |
gagaagaaatttaacagctttacgaatcgcaacagaattggtataagtgtttccagcagctgctaaaccaccaagagcaaaataagtaccataaataaag |
140 |
Q |
| |
|
||||||||||||||| ||||| ||||| ||| || ||||||||||||| |||||||||||||||||||||||||| || || ||| ||||||||| ||| |
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|
| T |
12135900 |
gagaagaaatttaactgctttgcgaatagcagcacaattggtataagtctttccagcagctgctaaaccaccaagtgccaaccaagaaccataaatgaag |
12135999 |
T |
|
| Q |
141 |
caaattccccaacttccataccatgaaccatcatctttttgtatatcttcaatgaatctaactgcattgcgaatgaaattctctatctctttcttcctat |
240 |
Q |
| |
|
||||| |||||| ||||||||||||||||||| | ||||| ||||||| | | || |||||||||| ||| |||| ||||||||||||||||||| |
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|
| T |
12136000 |
caaataccccaagctccataccatgaaccatcagatgtttgtttatcttctaggtattgaactgcattggcaataaaatcgtctatctctttcttcctat |
12136099 |
T |
|
| Q |
241 |
gct |
243 |
Q |
| |
|
||| |
|
|
| T |
12136100 |
gct |
12136102 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 5719537 - 5719762
Alignment:
| Q |
18 |
ccaccatcctctctttgtgtcgagagaagaaatttaacagctttacgaatcgcaacagaattggtataagtgtttccagcagctgctaaaccaccaagag |
117 |
Q |
| |
|
|||||||||||||||||| | | || ||||||||||||||||| ||||| |||||| |||| |||||| || || || |||||| ||||||||||| |
|
|
| T |
5719537 |
ccaccatcctctctttgtattgtaagcagaaatttaacagctttgcgaattgcaacacaattctcataagtcttgcccgcgactgctagaccaccaagag |
5719636 |
T |
|
| Q |
118 |
caaaataagtaccataaataaagcaaattccccaacttccataccatgaaccatcatctttttgtatatcttcaatgaatctaactgcattgcgaatgaa |
217 |
Q |
| |
|
|||| ||| ||||||| | ||||||||||||||| |||||||||||||||||||| | ||||| ||||||||| |||| |||||| || |||||| |
|
|
| T |
5719637 |
caaaccaagaaccataagtgaagcaaattccccaatttccataccatgaaccatcacttgtttgtttatcttcaaggaattgaactgcttttgcaatgaa |
5719736 |
T |
|
| Q |
218 |
attctctatctctttcttcctatgct |
243 |
Q |
| |
|
|||||||| |||| ||| ||||||| |
|
|
| T |
5719737 |
attctctacttcttcctttctatgct |
5719762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 5666351 - 5666576
Alignment:
| Q |
18 |
ccaccatcctctctttgtgtcgagagaagaaatttaacagctttacgaatcgcaacagaattggtataagtgtttccagcagctgctaaaccaccaagag |
117 |
Q |
| |
|
|||||||||||||||||| | | || ||||||||||||||||| ||||| ||| || |||| |||||| || || || |||| || ||| ||||||| |
|
|
| T |
5666351 |
ccaccatcctctctttgtattgtaagcagaaatttaacagctttgcgaattgcagcacaattctcataagtcttaccggcggctgttagaccgccaagag |
5666450 |
T |
|
| Q |
118 |
caaaataagtaccataaataaagcaaattccccaacttccataccatgaaccatcatctttttgtatatcttcaatgaatctaactgcattgcgaatgaa |
217 |
Q |
| |
|
|||| ||| ||||||| | ||||||||||||||| |||||||||||||||||||| | ||||| ||||||||| |||| ||||||| || |||||| |
|
|
| T |
5666451 |
caaaccaagaaccataagtgaagcaaattccccaatttccataccatgaaccatcacttgtttgtttatcttcaaggaatttaactgcttttgcaatgaa |
5666550 |
T |
|
| Q |
218 |
attctctatctctttcttcctatgct |
243 |
Q |
| |
|
|||||||| |||| ||| ||||||| |
|
|
| T |
5666551 |
attctctacttcttcctttctatgct |
5666576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 5687421 - 5687646
Alignment:
| Q |
18 |
ccaccatcctctctttgtgtcgagagaagaaatttaacagctttacgaatcgcaacagaattggtataagtgtttccagcagctgctaaaccaccaagag |
117 |
Q |
| |
|
|||||||||||||||||| | | || ||||||||||||||||| ||||| ||| || |||| |||||| || || || |||| || ||| ||||||| |
|
|
| T |
5687421 |
ccaccatcctctctttgtattgtaagcagaaatttaacagctttgcgaattgcagcacaattctcataagtcttgccggcggctgttagaccgccaagag |
5687520 |
T |
|
| Q |
118 |
caaaataagtaccataaataaagcaaattccccaacttccataccatgaaccatcatctttttgtatatcttcaatgaatctaactgcattgcgaatgaa |
217 |
Q |
| |
|
|||| ||| ||||||| | ||||||||||||||| |||||||||||||||||||| | ||||| ||||||||| |||| ||||||| || |||||| |
|
|
| T |
5687521 |
caaaccaagaaccataagtgaagcaaattccccaatttccataccatgaaccatcacttgtttgtttatcttcaaggaatttaactgcttttgcaatgaa |
5687620 |
T |
|
| Q |
218 |
attctctatctctttcttcctatgct |
243 |
Q |
| |
|
|||||||| |||| ||| ||||||| |
|
|
| T |
5687621 |
attctctacttcttcctttctatgct |
5687646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 128 - 232
Target Start/End: Original strand, 5652914 - 5653018
Alignment:
| Q |
128 |
accataaataaagcaaattccccaacttccataccatgaaccatcatctttttgtatatcttcaatgaatctaactgcattgcgaatgaaattctctatc |
227 |
Q |
| |
|
||||||||| ||||||||||||||| | ||||||||||||||||| | ||||| | ||||||||||| ||| ||||| ||||||||| |||||| |
|
|
| T |
5652914 |
accataaatgaagcaaattccccaattcccataccatgaaccatcgattgtttgtgaagattcaatgaatcgaaccgcatttgcaatgaaattatctatc |
5653013 |
T |
|
| Q |
228 |
tcttt |
232 |
Q |
| |
|
||||| |
|
|
| T |
5653014 |
tcttt |
5653018 |
T |
|
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