View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11874_low_35 (Length: 242)
Name: NF11874_low_35
Description: NF11874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11874_low_35 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 13054040 - 13053812
Alignment:
| Q |
1 |
cgtgccggctcccatgatggcataccaccttttttaccctgcaagaatgaaagaaaaaagtaaatgatcaaactcatttgcacaattcgcgcatttccgt |
100 |
Q |
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| T |
13054040 |
cgtgcccgctcccatgatggcataccaccttttttaccctgcaagaatgaaagaaaaaagtaaatgatcaaactcatgtgcacaattcgcacatttccgt |
13053941 |
T |
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| Q |
101 |
tgatgaagtaacatgttaaaagatcaataattcgtcaatgtatcaagtaaaactatatggctataagttgaatagtagaacttacctgaagtgacaacag |
200 |
Q |
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| T |
13053940 |
tgatgaagtaacatgttaaaagatcaataattcgtcaatgtattaattaaaactatatggctataaattgaatagtagaacttacctgaagtgacaacag |
13053841 |
T |
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| Q |
201 |
aagattgactgaatcatataacctctctg |
229 |
Q |
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| T |
13053840 |
aagattgactgaatcatataacctctctg |
13053812 |
T |
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Target: scaffold0013 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 224
Target Start/End: Original strand, 91412 - 91451
Alignment:
| Q |
185 |
cctgaagtgacaacagaagattgactgaatcatataacct |
224 |
Q |
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| T |
91412 |
cctgaagtgacaacaggagattgactgaatcatataacct |
91451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 220
Target Start/End: Original strand, 5653927 - 5653967
Alignment:
| Q |
180 |
acttacctgaagtgacaacagaagattgactgaatcatata |
220 |
Q |
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| T |
5653927 |
actttcctgaagtgacaacacaaaattgactgaatcatata |
5653967 |
T |
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