View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11874_low_38 (Length: 239)
Name: NF11874_low_38
Description: NF11874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11874_low_38 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 21 - 239
Target Start/End: Original strand, 16926471 - 16926689
Alignment:
| Q |
21 |
tgaaatagagccaaaagatgatgaatctttggattatgtctacttgatttatttgaccaaagggagtaaaaagggcaataagatttttgatagtgattta |
120 |
Q |
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| T |
16926471 |
tgaaatagagccaaaagatgatgaatctttggattatgtctacttgatttatttgaccaaagggagtaaaaagggcaataagatttttgatagtgattta |
16926570 |
T |
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| Q |
121 |
caacaacttgttggtaagttgaatgtatcaacaattttcactctttgttctaacaattatataatgatggaaacacattttgtgttatttggtgacattc |
220 |
Q |
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| T |
16926571 |
caacaacttgttggtaagttgaatgtatcaacaattttcactctttgttctaacaattatataatgatggaaacacattttttgttatttggtgacattc |
16926670 |
T |
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| Q |
221 |
aaattcatgacaaagaaat |
239 |
Q |
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| T |
16926671 |
aaattcatgacaaagaaat |
16926689 |
T |
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