View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11874_low_4 (Length: 607)

Name: NF11874_low_4
Description: NF11874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11874_low_4
NF11874_low_4
[»] chr4 (2 HSPs)
chr4 (1-318)||(54180025-54180342)
chr4 (348-589)||(54180372-54180613)
[»] chr3 (3 HSPs)
chr3 (15-318)||(1211060-1211366)
chr3 (355-589)||(1210783-1211023)
chr3 (53-120)||(38102604-38102671)
[»] chr5 (8 HSPs)
chr5 (15-318)||(41942793-41943099)
chr5 (15-318)||(41948307-41948613)
chr5 (9-184)||(22794935-22795110)
chr5 (423-589)||(22794533-22794699)
chr5 (355-589)||(41948030-41948270)
chr5 (218-318)||(22794822-22794922)
chr5 (377-589)||(41942516-41942734)
chr5 (376-420)||(22794720-22794764)
[»] chr7 (1 HSPs)
chr7 (71-144)||(39485527-39485600)


Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 54180025 - 54180342
Alignment:
Q  1 gttggaactatttgtaggaaaatgccacacatattgcttgtatgttgattttggatgaaagaaaacaggaatacaacccgccaaaatcgaatcaaaagtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54180025 gttggaactatttgtaggaaaatgccacacatattgcttgtatgttgattttggatgaaagaaaacaggaatacaacccgccaaaatcgaatcaaaagtt 54180124  T
Q  101 gatctccttgtgtaagaatcccccggcggttgtaaacaaaaaactgaattcctaaaagcatccataacatgaacaggatcgccacaacgatctttggtat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  54180125 gatctccttgtgtaagaatcccccggcggttgtaaacaaaaaactgaattcctaaaaacatccataacatgaacaggatcgccacaacgatctttgttat 54180224  T
Q  201 aaccataatagcatccaacaagtttgcaacccttggaagattcgcaatgttcgattaactcattcctaatagaagatgttacattaggccttggagcacc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54180225 aaccataatagcatccaacaagtttgcaacccttggaagattcgcaatgttcgattaactcattcctaatagaagatgttacattaggccttggagcacc 54180324  T
Q  301 aacaaatgaaaacaaata 318  Q
    ||||||||||||||||||    
T  54180325 aacaaatgaaaacaaata 54180342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 348 - 589
Target Start/End: Original strand, 54180372 - 54180613
Alignment:
Q  348 gccacccaaaaatttgagcatcattattaggatgaaaataagttggatatggaattgaaaattcattatcataaccacatgattctattgataacatcga 447  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54180372 gccacccaaaaatttgagcatcattagtaggatgaaaataagttggatatggaattgaaaattcattatcataaccacatgattctattgataacatcga 54180471  T
Q  448 catgttacttgcttccggtaaaaacatcaactttgttccccaatcttcattttcatcacttcttcttctaaaatcataacttattcttccaccaaccatg 547  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54180472 catgttacttgcttccggtaaaaacatcaactttgttccccaatcttcattttcatcacttcttcttctaaaatcataacttattcttccaccaaccatg 54180571  T
Q  548 aaatgatccttaccatatactcttttccattgaggttgttgt 589  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  54180572 aaatgatccttaccatatactcttttccattgaggttgttgt 54180613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 145; Significance: 5e-76; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 15 - 318
Target Start/End: Complemental strand, 1211366 - 1211060
Alignment:
Q  15 taggaaaatgccacacatattgcttgtatgttgattttggatgaaagaaaacaggaatacaacccgccaaaatcgaatcaaaagttgatctccttgtgta 114  Q
    ||||||||||||||| |||||||||||||| ||||  |||||| ||||||||||||||||||||||||||||||||||||||| ||||||| || ||  |    
T  1211366 taggaaaatgccacaaatattgcttgtatgctgatagtggatgcaagaaaacaggaatacaacccgccaaaatcgaatcaaaaattgatcttctagtaaa 1211267  T
Q  115 agaatcccccggcggttgtaaacaaaaaactgaattcctaaaagcatccataacatgaacaggatcgccacaacgatct---ttggtataaccataatag 211  Q
    |||||||||||||||||||||||||||||| ||||||  ||||  ||||||||| ||||||||||||| |||||  | |   ||  || |||||| |||     
T  1211266 agaatcccccggcggttgtaaacaaaaaaccgaattctgaaaattatccataacttgaacaggatcgcgacaactttttttcttactagaaccatgataa 1211167  T
Q  212 catccaacaagtttgcaacccttggaagattcgcaatgttcgattaactcattcctaatagaagatgttacattaggccttggagcaccaacaaatgaaa 311  Q
    ||||||||| |||| |||| ||| ||||||||||||||||||||||||| ||| ||||||||||||| |  || ||||||||||||||| ||||||| ||    
T  1211166 catccaacacgtttacaactcttagaagattcgcaatgttcgattaactgatttctaatagaagatggtgaatcaggccttggagcaccgacaaatgtaa 1211067  T
Q  312 acaaata 318  Q
    |||||||    
T  1211066 acaaata 1211060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 355 - 589
Target Start/End: Complemental strand, 1211023 - 1210783
Alignment:
Q  355 aaaaatttgagcatcattattaggatgaaaataagttggatatggaattgaaaattcattatcat---aac---cacatgattctattgataacatcgac 448  Q
    |||||||| | |||||||  ||| |||||||||||||||||||||||||| ||||||||| ||||   |||    ||||||||||||| | || |  |||    
T  1211023 aaaaatttcatcatcatttgtagcatgaaaataagttggatatggaattggaaattcattgtcatataaacatttacatgattctattaacaaaaatgac 1210924  T
Q  449 atgttacttgcttccggtaaaaacatcaactttgttccccaatcttcattttcatcacttcttcttctaaaatcataacttattcttccaccaaccatga 548  Q
    ||||||||| |||| || || ||||| | ||||||||||||||  | || |  ||||| |  ||| | ||||||| |||  |||||||||||||||||||    
T  1210923 atgttacttacttctggcaagaacattagctttgttccccaattatgatctaaatcaccttctctccaaaaatcacaaccaattcttccaccaaccatga 1210824  T
Q  549 aatgatccttaccatatactcttttccattgaggttgttgt 589  Q
    ||||||| |||||||  | ||||||||| |||| |||||||    
T  1210823 aatgatctttaccatgcaatcttttccactgagattgttgt 1210783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 53 - 120
Target Start/End: Complemental strand, 38102671 - 38102604
Alignment:
Q  53 ggatgaaagaaaacaggaatacaacccgccaaaatcgaatcaaaagttgatctccttgtgtaagaatc 120  Q
    |||||||| || |||||||||||||| || ||||| ||||||||| ||||||| |||||||| |||||    
T  38102671 ggatgaaaaaacacaggaatacaaccagctaaaattgaatcaaaaattgatcttcttgtgtatgaatc 38102604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 1e-61; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 15 - 318
Target Start/End: Complemental strand, 41943099 - 41942793
Alignment:
Q  15 taggaaaatgccacacatattgcttgtatgttgattttggatgaaagaaaacaggaatacaacccgccaaaatcgaatcaaaagttgatctccttgtgta 114  Q
    ||||||||||||||| |||||||||||||| |||   |||||| |||||||||||||||||||| |||||||||||||||||  ||||||| || ||  |    
T  41943099 taggaaaatgccacaaatattgcttgtatgctgacagtggatgcaagaaaacaggaatacaacctgccaaaatcgaatcaaatattgatcttctagtaaa 41943000  T
Q  115 agaatcccccggcggttgtaaacaaaaaactgaattcctaaaagcatccataacatgaacaggatcgccacaacgatct---ttggtataaccataatag 211  Q
    |||||||||   |||||||||||||||||| ||||||  ||||  ||||||||| |||||||||||||  ||||  | |   ||  || |||||| |||     
T  41942999 agaatccccaaccggttgtaaacaaaaaaccgaattctgaaaattatccataacttgaacaggatcgcggcaactttttttcttactagaaccatgataa 41942900  T
Q  212 catccaacaagtttgcaacccttggaagattcgcaatgttcgattaactcattcctaatagaagatgttacattaggccttggagcaccaacaaatgaaa 311  Q
    |||| ||||| |||||||| ||| |||||||| ||||||| |||||||||||| |||||||||||||||  |||||| ||||||||||| ||||||||||    
T  41942899 catcgaacaaatttgcaactcttagaagattcacaatgtttgattaactcatttctaatagaagatgttgaattaggtcttggagcaccgacaaatgaaa 41942800  T
Q  312 acaaata 318  Q
    |||||||    
T  41942799 acaaata 41942793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 15 - 318
Target Start/End: Complemental strand, 41948613 - 41948307
Alignment:
Q  15 taggaaaatgccacacatattgcttgtatgttgattttggatgaaagaaaacaggaatacaacccgccaaaatcgaatcaaaagttgatctccttgtgta 114  Q
    ||||||||||||||| |||||||||||||| ||||  |||||||||||||||||||||||||||||||||||| ||||||||| ||||||  || ||  |    
T  41948613 taggaaaatgccacaaatattgcttgtatgctgatagtggatgaaagaaaacaggaatacaacccgccaaaattgaatcaaaaattgatcatctagtaaa 41948514  T
Q  115 agaatcccccggcggttgtaaacaaaaaactgaattcctaaaagcatccataacatgaacaggatcgccacaac-gatct--ttggtataaccataatag 211  Q
    ||||||||||  ||||||||||||||| || ||||||  ||||  ||||||||| ||||||||||||| |||||  || |  ||  || |||||| |||     
T  41948513 agaatcccccatcggttgtaaacaaaataccgaattctgaaaattatccataacttgaacaggatcgcgacaacttattttcttactagaaccatgataa 41948414  T
Q  212 catccaacaagtttgcaacccttggaagattcgcaatgttcgattaactcattcctaatagaagatgttacattaggccttggagcaccaacaaatgaaa 311  Q
    ||||||||| |||| |||| ||| |||||||||||||||| |||||||| ||| |||| |||||||| |  || ||||||||||||||| ||||||| ||    
T  41948413 catccaacacgtttacaactcttagaagattcgcaatgtttgattaactgatttctaacagaagatggtgaatcaggccttggagcaccgacaaatgtaa 41948314  T
Q  312 acaaata 318  Q
    |||||||    
T  41948313 acaaata 41948307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 9 - 184
Target Start/End: Complemental strand, 22795110 - 22794935
Alignment:
Q  9 tatttgtaggaaaatgccacacatattgcttgtatgttgattttggatgaaagaaaacaggaatacaacccgccaaaatcgaatcaaaagttgatctcct 108  Q
    ||||| ||||||||||||||| ||||||||| || | ||| | |||||||||||||||||||||||| || |||||||||||||||||||||||||| ||    
T  22795110 tatttttaggaaaatgccacatatattgcttatacgctgaatgtggatgaaagaaaacaggaatacagccggccaaaatcgaatcaaaagttgatcttct 22795011  T
Q  109 tgtgtaagaatcccccggcggttgtaaacaaaaaactgaattcctaaaagcatccataacatgaacaggatcgcca 184  Q
     ||  ||||||| || || |||||||||||||||||||| |||  |||| |||||| ||||||||| |||||||||    
T  22795010 ggtaaaagaatcaccaggaggttgtaaacaaaaaactgatttctgaaaaacatccagaacatgaacgggatcgcca 22794935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 423 - 589
Target Start/End: Complemental strand, 22794699 - 22794533
Alignment:
Q  423 cacatgattctattgataacatcgacatgttacttgcttccggtaaaaacatcaactttgttccccaatcttcattttcatcacttcttcttctaaaatc 522  Q
    |||| |||||||||  ||| ||||  |||||||| |||||||| | |||||| | |||||||||||||||||||| || ||| |||| ||| ||||||||    
T  22794699 cacacgattctattagtaaaatcgtaatgttactagcttccggcagaaacattagctttgttccccaatcttcatctttatcgcttcctctcctaaaatc 22794600  T
Q  523 ataacttattcttccaccaaccatgaaatgatccttaccatatactcttttccattgaggttgttgt 589  Q
    ||| |  | ||||||||||||||||||||||||||||||||| | || ||||||||||| |||||||    
T  22794599 atatccaactcttccaccaaccatgaaatgatccttaccatacattcgtttccattgagattgttgt 22794533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 355 - 589
Target Start/End: Complemental strand, 41948270 - 41948030
Alignment:
Q  355 aaaaatttgagcatcattattaggatgaaaataagttggatatggaattgaaaattcattatcat---aacc---acatgattctattgataacatcgac 448  Q
    |||||||| | |||||||  |||||||||||||||||||||||||||||| ||||||||| ||||   ||||   ||||||||||||| | || |  |||    
T  41948270 aaaaatttcatcatcatttgtaggatgaaaataagttggatatggaattggaaattcattgtcatataaacctttacatgattctattaacaaaaatgac 41948171  T
Q  449 atgttacttgcttccggtaaaaacatcaactttgttccccaatcttcattttcatcacttcttcttctaaaatcataacttattcttccaccaaccatga 548  Q
    ||||||||| |||| || || ||||| | ||||||||||||||  | || |  ||||| |  ||| ||||||||| |||  |||||||||||||||||||    
T  41948170 atgttacttacttctggcaagaacattagctttgttccccaattatgatctgaatcaccttctctcctaaaatcacaaccaattcttccaccaaccatga 41948071  T
Q  549 aatgatccttaccatatactcttttccattgaggttgttgt 589  Q
    ||||||| |||||||  | ||||||||| |||| |||||||    
T  41948070 aatgatctttaccatgcaatcttttccactgagattgttgt 41948030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 218 - 318
Target Start/End: Complemental strand, 22794922 - 22794822
Alignment:
Q  218 acaagtttgcaacccttggaagattcgcaatgttcgattaactcattcctaatagaagatgttacattaggccttggagcaccaacaaatgaaaacaaat 317  Q
    ||||||||||||| ||| |||||||  ||||| ||||||||||| || ||||| |||||||||| ||| |||||||||||||| ||||||||||||||||    
T  22794922 acaagtttgcaactcttagaagattgacaatgatcgattaactcgtttctaattgaagatgttaaatttggccttggagcaccgacaaatgaaaacaaat 22794823  T
Q  318 a 318  Q
    |    
T  22794822 a 22794822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 377 - 589
Target Start/End: Complemental strand, 41942734 - 41942516
Alignment:
Q  377 ggatgaaaataagttggatatggaattgaaaattcattatcat---aacc---acatgattctattgataacatcgacatgttacttgcttccggtaaaa 470  Q
    |||||||||||||||||||||||||||| ||||||||| ||||   ||||   ||| ||||||||| | || |  |||| |||||||  ||| || ||      
T  41942734 ggatgaaaataagttggatatggaattggaaattcattgtcatataaacctttacacgattctattaacaaaaatgacacgttacttaattctggcaagg 41942635  T
Q  471 acatcaactttgttccccaatcttcattttcatcacttcttcttctaaaatcataacttattcttccaccaaccatgaaatgatccttaccatatactct 570  Q
    |||| | |||||||||  |||| ||||    ||| | |  ||| ||||||||| |||  |||||||||||||||||||||||||| |||||||  | |||    
T  41942634 acattagctttgttccaaaatcatcatccaaatctccttctctcctaaaatcacaaccaattcttccaccaaccatgaaatgatctttaccatgcaatct 41942535  T
Q  571 tttccattgaggttgttgt 589  Q
    |||||| |||| |||||||    
T  41942534 tttccactgagattgttgt 41942516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 420
Target Start/End: Complemental strand, 22794764 - 22794720
Alignment:
Q  376 aggatgaaaataagttggatatggaattgaaaattcattatcata 420  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||    
T  22794764 aggatgaaaataagttggatatggaattgcaaattcattctcata 22794720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 71 - 144
Target Start/End: Original strand, 39485527 - 39485600
Alignment:
Q  71 atacaacccgccaaaatcgaatcaaaagttgatctccttgtgtaagaatcccccggcggttgtaaacaaaaaac 144  Q
    |||||||| ||||| |||||||||||||  ||||| ||||| |||||||| ||| | ||||| | |||||||||    
T  39485527 atacaaccagccaacatcgaatcaaaagcagatcttcttgtataagaatcaccctgaggttgaagacaaaaaac 39485600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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