View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11874_low_40 (Length: 220)
Name: NF11874_low_40
Description: NF11874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11874_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 210
Target Start/End: Complemental strand, 17734663 - 17734464
Alignment:
| Q |
11 |
gagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggag |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17734663 |
gagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggag |
17734564 |
T |
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| Q |
111 |
ccggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataataagtgtttggtgatgt |
210 |
Q |
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|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
17734563 |
ccggcagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataacaagtgtttggtgatgt |
17734464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 11 - 210
Target Start/End: Complemental strand, 17743903 - 17743704
Alignment:
| Q |
11 |
gagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggag |
110 |
Q |
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||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17743903 |
gagcacagaagaaacaacctgagagcataacgatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggag |
17743804 |
T |
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| Q |
111 |
ccggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataataagtgtttggtgatgt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
17743803 |
ccggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaatgttcttttcattgagtttttgattggataacaagtgtttggtgatgt |
17743704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 11 - 210
Target Start/End: Complemental strand, 16720679 - 16720480
Alignment:
| Q |
11 |
gagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggag |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| |
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| T |
16720679 |
gagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggagaaaggagagaagttgtttttgagtgggaccctcggag |
16720580 |
T |
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| Q |
111 |
ccggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataataagtgtttggtgatgt |
210 |
Q |
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|||||||| |||||| |||| |||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||| |
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| T |
16720579 |
ccggtagcaatcatactgagcacggtgttaagcgataatggtgaaaacacaacgttctcttctttgagtttttgattggataacaagtgtttggtgatgt |
16720480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 11 - 210
Target Start/End: Complemental strand, 17697693 - 17697494
Alignment:
| Q |
11 |
gagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggag |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| |
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| T |
17697693 |
gagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggagaaaggagagaagttgtttttgagtgggaccctcggag |
17697594 |
T |
|
| Q |
111 |
ccggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataataagtgtttggtgatgt |
210 |
Q |
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|||||||| |||||| |||| |||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||| |
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| T |
17697593 |
ccggtagcaatcatactgagcacggtgttaagcgataatggtgaaaacacaacgttctcttctttgagtttttgattggataacaagtgtttggtgatgt |
17697494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 11 - 210
Target Start/End: Complemental strand, 17716612 - 17716413
Alignment:
| Q |
11 |
gagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggag |
110 |
Q |
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||||||||||||||| ||| ||||| ||||||||||||||| ||||| |||||| ||||||||||||||||||||||| ||||| ||||||||||||||| |
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| T |
17716612 |
gagcacagaagaaaccagccgagagtataaggatttgagattaccgggggattctgactggaggaaggagagaagttgtttttgagtgggaccctcggag |
17716513 |
T |
|
| Q |
111 |
ccggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataataagtgtttggtgatgt |
210 |
Q |
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||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
17716512 |
ccggtagcgatcatactgagcacggtgttgagcgataatggtgaaaacacaacattcttttctttgagtttttgattggataacaagtgtttggtgatgt |
17716413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 11 - 210
Target Start/End: Complemental strand, 16729552 - 16729353
Alignment:
| Q |
11 |
gagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggag |
110 |
Q |
| |
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||||||||||||||| ||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| |||| |
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| T |
16729552 |
gagcacagaagaaaccagccgagagtataaggatttgagatcaccgggagattcagactggaggaaggagagaagttgtttttgagtgggacccttggag |
16729453 |
T |
|
| Q |
111 |
ccggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataataagtgtttggtgatgt |
210 |
Q |
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| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||| |
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| T |
16729452 |
ctggtagcgatcatactgagcacggtgttgagcgataatggtgaaaacacaacgttcttttctttgagttcttgattggataacaagtgtttggtgatgt |
16729353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 11 - 210
Target Start/End: Complemental strand, 17706624 - 17706425
Alignment:
| Q |
11 |
gagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggag |
110 |
Q |
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||||||||||||||| ||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||| |||| |
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| T |
17706624 |
gagcacagaagaaaccagccgagagtataaggatttgagatcaccgggagattcagactggaggaaggagagaagttgtttttgagtgggacccttggag |
17706525 |
T |
|
| Q |
111 |
ccggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataataagtgtttggtgatgt |
210 |
Q |
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| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||| |
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| T |
17706524 |
ctggtagcgatcatactgagcacggtgttgagcgataatggtgaaaacacaacgttcttttctttgagttcttgattggataacaagtgtttggtgatgt |
17706425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 46497451 - 46497386
Alignment:
| Q |
56 |
ggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagccggtagcgat |
121 |
Q |
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|||||||| || ||||||||| ||||||||| | ||||||||| ||||||||||| |||||||| |
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| T |
46497451 |
ggtggatttggattggaggaagttgagaagttgttgttgtgtggggccctcggagccagtagcgat |
46497386 |
T |
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