View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11874_low_5 (Length: 604)
Name: NF11874_low_5
Description: NF11874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11874_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 2 - 589
Target Start/End: Original strand, 5603930 - 5604521
Alignment:
| Q |
2 |
taagttttgcatcacacatcagttagcttttatcatgggatcaataaactcattattaaattaaatagatatttattgattcaatcgtnnnnnnncacgc |
101 |
Q |
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| T |
5603930 |
taagttttgcatcacacatcagttagcttttatcatgggatcaataaactcattattaaattaaatagatatttattgattcaatcgtaaaaaaacacgc |
5604029 |
T |
|
| Q |
102 |
taaactattttacttgttcacaaatcctattgttatatatctaatatttcttggcacctttaagtagaaggaagaattaataactgtacaagggtgggga |
201 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5604030 |
taaactattttacttgttcacaaaacctattgttatatatctaatatttcttggcacctttaagtagaaggaagaattaataactgtacaagggtgggga |
5604129 |
T |
|
| Q |
202 |
cataatatctaaatttcaagtttctttttcaacctaactcttcattcattggattcctgtcatccgaacgttgcctcagatgcaaacgaagcaaccacaa |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5604130 |
cataatatctaaatttcaagtttctttttcaacctaactcttcattcattggattcctgtcatccgaacgttgcctcagatgcaaacgaagcaaccacaa |
5604229 |
T |
|
| Q |
302 |
cgtggcccttttttcaaactgcttatttcagcttaattcttgtgacgatattacatcattgttaagcacttgaagttaagtttaagtggatattaactag |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5604230 |
cgtggcccttttttcaaactgcttatttcagcttaattcttgtgacgatattacatcattgttaagcacttgaagttaagtttaagtggatattaactag |
5604329 |
T |
|
| Q |
402 |
taacatcaataaagttcaatactgtttatgctaggtatgagattgaaactggcgacacacccctcaagatcgtaccaaactagaaaacgaaatagcatta |
501 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5604330 |
taacatcaataaagttcaatactgtttatgctaggtatgagattgaaacaggcgacacacccctcaagatcttaccaaactagaaaacgaaatagcatta |
5604429 |
T |
|
| Q |
502 |
tggctatg----tgtgagaagtggttgtcttgcatgcataaaactttgtattacaatagatatttcggaatcacaatagtcttcaataattt |
589 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
5604430 |
tggctatgtacctgtgagaagtggttgtcttgcatgcataaaactttttattacgatagatatttcggaatcacaatagtctacaataattt |
5604521 |
T |
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