View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11874_low_7 (Length: 594)

Name: NF11874_low_7
Description: NF11874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11874_low_7
NF11874_low_7
[»] chr1 (4 HSPs)
chr1 (296-579)||(52421502-52421788)
chr1 (12-311)||(52421201-52421490)
chr1 (386-499)||(42713751-42713865)
chr1 (131-174)||(38877680-38877723)
[»] chr5 (1 HSPs)
chr5 (30-157)||(37124361-37124487)
[»] chr3 (1 HSPs)
chr3 (97-174)||(50621707-50621784)
[»] chr8 (2 HSPs)
chr8 (114-174)||(45512843-45512903)
chr8 (116-166)||(9989310-9989360)
[»] chr7 (3 HSPs)
chr7 (115-168)||(41626853-41626906)
chr7 (30-73)||(12965817-12965860)
chr7 (29-78)||(47439052-47439101)
[»] chr6 (3 HSPs)
chr6 (126-167)||(2079220-2079261)
chr6 (104-152)||(20834423-20834471)
chr6 (114-174)||(12134248-12134308)
[»] chr4 (4 HSPs)
chr4 (113-174)||(38904066-38904127)
chr4 (126-174)||(29398706-29398754)
chr4 (128-174)||(40933243-40933289)
chr4 (114-167)||(20105825-20105878)
[»] chr2 (2 HSPs)
chr2 (125-174)||(37393514-37393563)
chr2 (128-174)||(28908489-28908535)


Alignment Details
Target: chr1 (Bit Score: 260; Significance: 1e-144; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 296 - 579
Target Start/End: Original strand, 52421502 - 52421788
Alignment:
Q  296 atactagaagttgtaataacagattttgtttaatatgcgcaaggaaaatagtcttacatcatccacacgagtgtgtgt--tttcatccatggatcaataa 393  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  52421502 atactagaagttgtaataacagattttgtttaatacgcgcaaggaaaatagtcttacatcatccacacgagtgtgtgtgttttcatccatggatcaataa 52421601  T
Q  394 atattatcatatcttagttgatcccatgatgcaatttattgattcaaccgt-gaaaataagttgtgtttgatgcaaaacttatcttatttgtgcaccata 492  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  52421602 atattatcatatcttagttgatcccatgatgcaatttattgattcaaccgtcgaaaataagttgtgtttgatgcaaaacttatcttatttgtgcaccata 52421701  T
Q  493 aaactagacttaacaaacagtatgaaaatctgaacctaagtttgtctgatttattaaaagtgtgattttgatcaaccgtgttatttt 579  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  52421702 aaactagacttaacaaacagtatgaaaatctgaacctaagtttgtctgatttattaaaagtgtgattttgatcaactgtgttatttt 52421788  T

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Target: chr1; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 12 - 311
Target Start/End: Original strand, 52421201 - 52421490
Alignment:
Q  12 agagaagagtttaagtgtttttacgtgatatgaaagtaccactcatgttgaaggagaaattttattgaataactttaagacggataatattgtatgaagt 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  52421201 agagaagagtttaagtgtttttacgtgatatgaaagtaccactcatgttgaaggagaaattttattgaataactttaagacggacaatgttgtatgaagt 52421300  T
Q  112 agagtgttggacaatgaagaactaacacgagaataaaataagtgtagcgaagatgagaatgttacaaagattggtgaaaataagtagagtttaaatttaa 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  52421301 agagtgttggacaatgaagaactaacacgagaataaaataagtgtagcgaagatgagaatgttacaaaaattggtgaaaataagtagagtttaaatttaa 52421400  T
Q  212 tacagttatatgttggagtttagaagtatttaccatttacaaaaaatctttgtagtgaatattagttatatccatcgttgaattatactagaagttgtaa 311  Q
    ||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52421401 tacagttatatgttggag----------tttaccatttacaaaaaatctttgtagtgaatattagttatatccatcgttgaattatactagaagttgtaa 52421490  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 386 - 499
Target Start/End: Original strand, 42713751 - 42713865
Alignment:
Q  386 atcaataaatattatcatatcttagttgatcccatgatgcaatttattgattcaaccgtg-aaaataagttgtgtttgatgcaaaacttatcttatttgt 484  Q
    |||||||| ||| || |||||| | |||||||  |||||| ||||||||||  ||  ||| ||||||| |||||  ||||||||||||||||| ||||||    
T  42713751 atcaataagtatcatgatatctcatttgatccactgatgcgatttattgatcgaattgtggaaaataacttgtgcatgatgcaaaacttatctcatttgt 42713850  T
Q  485 gcaccataaaactag 499  Q
    |||||||||||||||    
T  42713851 gcaccataaaactag 42713865  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 131 - 174
Target Start/End: Complemental strand, 38877723 - 38877680
Alignment:
Q  131 aactaacacgagaataaaataagtgtagcgaagatgagaatgtt 174  Q
    |||||||||||||||||||||||||||||  ||||||| |||||    
T  38877723 aactaacacgagaataaaataagtgtagcagagatgaggatgtt 38877680  T

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Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 30 - 157
Target Start/End: Original strand, 37124361 - 37124487
Alignment:
Q  30 ttttacgtgatatgaaagtaccactcatgttgaaggagaaattttattgaataactttaagacggataatattgtatgaagtagagtgttggacaatgaa 129  Q
    ||||| |||| |||||||||||||||| ||| |||||||||||| |||| | || | |||||| || ||| || |||||| |||||||||||||  ||||    
T  37124361 ttttatgtgaaatgaaagtaccactcaagttaaaggagaaatttcattggacaagtgtaagaccgacaatgttatatgaa-tagagtgttggacggtgaa 37124459  T
Q  130 gaactaacacgagaataaaataagtgta 157  Q
    || | |||||||||||| ||| ||||||    
T  37124460 gacccaacacgagaatacaatcagtgta 37124487  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 50621784 - 50621707
Alignment:
Q  97 aatattgtatgaagtagagtgttggacaatgaagaactaacacgagaataaaataagtgtagcgaagatgagaatgtt 174  Q
    |||||||| ||||  ||||||||  ||| | ||||||||| ||||| ||||||||||||||||| |||||||||||||    
T  50621784 aatattgtgtgaaacagagtgttcaacagtcaagaactaatacgaggataaaataagtgtagcggagatgagaatgtt 50621707  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 45512903 - 45512843
Alignment:
Q  114 agtgttggacaatgaagaactaacacgagaataaaataagtgtagcgaagatgagaatgtt 174  Q
    ||||||||||| |||||||| ||||||| |||||||||||  ||||| |||||||||||||    
T  45512903 agtgttggacattgaagaaccaacacgaaaataaaataagcatagcggagatgagaatgtt 45512843  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 9989360 - 9989310
Alignment:
Q  116 tgttggacaatgaagaactaacacgagaataaaataagtgtagcgaagatg 166  Q
    ||||||||||||||||||||| | || ||||||||||| |||| |||||||    
T  9989360 tgttggacaatgaagaactaaaatgaaaataaaataagcgtagtgaagatg 9989310  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 115 - 168
Target Start/End: Original strand, 41626853 - 41626906
Alignment:
Q  115 gtgttggacaatgaagaactaacacgagaataaaataagtgtagcgaagatgag 168  Q
    ||||| |||||||||||||||||| |||| |||||| ||||||||| |||||||    
T  41626853 gtgtttgacaatgaagaactaacatgagagtaaaattagtgtagcggagatgag 41626906  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 12965817 - 12965860
Alignment:
Q  30 ttttacgtgatatgaaagtaccactcatgttgaaggagaaattt 73  Q
    ||||| |||||| |||||||||||||| ||||||||||||||||    
T  12965817 ttttatgtgatacgaaagtaccactcaagttgaaggagaaattt 12965860  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 78
Target Start/End: Original strand, 47439052 - 47439101
Alignment:
Q  29 tttttacgtgatatgaaagtaccactcatgttgaaggagaaattttattg 78  Q
    |||||| |||||| |||||||||||| | ||| |||||||||||||||||    
T  47439052 tttttatgtgatacgaaagtaccacttaagttaaaggagaaattttattg 47439101  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 126 - 167
Target Start/End: Original strand, 2079220 - 2079261
Alignment:
Q  126 tgaagaactaacacgagaataaaataagtgtagcgaagatga 167  Q
    |||||||||||||||||||||||||||| |||||| ||||||    
T  2079220 tgaagaactaacacgagaataaaataagcgtagcggagatga 2079261  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 152
Target Start/End: Complemental strand, 20834471 - 20834423
Alignment:
Q  104 tatgaagtagagtgttggacaatgaagaactaacacgagaataaaataa 152  Q
    |||||| ||||||||||  ||||||||| ||||||||||||||||||||    
T  20834471 tatgaaatagagtgttgagcaatgaagatctaacacgagaataaaataa 20834423  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 114 - 174
Target Start/End: Complemental strand, 12134308 - 12134248
Alignment:
Q  114 agtgttggacaatgaagaactaacacgagaataaaataagtgtagcgaagatgagaatgtt 174  Q
    |||||||| ||  |||||||||||||||||||||| ||||  ||||  |||||||||||||    
T  12134308 agtgttgggcagcgaagaactaacacgagaataaactaagcatagcagagatgagaatgtt 12134248  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 38904127 - 38904066
Alignment:
Q  113 gagtgttggacaatgaagaactaacacgagaataaaataagtgtagcgaagatgagaatgtt 174  Q
    ||||||||| || | || ||| ||||| ||||||||||||||||||| ||||||||||||||    
T  38904127 gagtgttgggcagtaaaaaaccaacacaagaataaaataagtgtagcaaagatgagaatgtt 38904066  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 29398706 - 29398754
Alignment:
Q  126 tgaagaactaacacgagaataaaataagtgtagcgaagatgagaatgtt 174  Q
    |||||||| |||| ||||||||||||||||||||| ||||||| |||||    
T  29398706 tgaagaaccaacatgagaataaaataagtgtagcggagatgaggatgtt 29398754  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 128 - 174
Target Start/End: Complemental strand, 40933289 - 40933243
Alignment:
Q  128 aagaactaacacgagaataaaataagtgtagcgaagatgagaatgtt 174  Q
    |||||| ||||||||| |||||||||||||||| ||||||| |||||    
T  40933289 aagaaccaacacgagagtaaaataagtgtagcgtagatgaggatgtt 40933243  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 167
Target Start/End: Complemental strand, 20105878 - 20105825
Alignment:
Q  114 agtgttggacaatgaagaactaacacgagaataaaataagtgtagcgaagatga 167  Q
    ||||||||||| ||||| |||||||| ||||||| |||| ||||||| ||||||    
T  20105878 agtgttggacagtgaaggactaacacaagaataatataaatgtagcggagatga 20105825  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 37393563 - 37393514
Alignment:
Q  125 atgaagaactaacacgagaataaaataagtgtagcgaagatgagaatgtt 174  Q
    ||||||||| |||||||||||||||||||||||| ||||| ||| |||||    
T  37393563 atgaagaacaaacacgagaataaaataagtgtagagaagacgaggatgtt 37393514  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 128 - 174
Target Start/End: Complemental strand, 28908535 - 28908489
Alignment:
Q  128 aagaactaacacgagaataaaataagtgtagcgaagatgagaatgtt 174  Q
    |||||| | ||||||| |||||||||||||||| |||||||||||||    
T  28908535 aagaaccagcacgagagtaaaataagtgtagcggagatgagaatgtt 28908489  T

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