View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11875_low_1 (Length: 502)
Name: NF11875_low_1
Description: NF11875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11875_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 425; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 18 - 470
Target Start/End: Original strand, 3826136 - 3826588
Alignment:
| Q |
18 |
ggctgtagaagagagatgagagctgttttattcagaatgaggatggattgtcttagtggattattcatttggaatgtgcttaaactgtccaaattaaacc |
117 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3826136 |
ggctgtagaagagagatgagagctgttttatttagaatgaggatggattgtcttagtggattattcatttggaatgtgcttaaactgtccaaattaaacc |
3826235 |
T |
|
| Q |
118 |
agtcgatatttcgtccatgaaaagcgctctcgctggtaacatgtgaagcaaaataggaagaagttttgtacgctaacttataactcacctgaagaacatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3826236 |
agtcgatatttcgtccatgaaaagcgctctcgctggtaacatgtgaagcaaaataggaagaagttttgtacgctaacttataactcacctgaagaacatt |
3826335 |
T |
|
| Q |
218 |
ctaatgtaagagacagttcaattgtctattagacatggcttctgctgatattaaagtacgtggtttaccaaatgctgcaaaaaatgtttcatatgttact |
317 |
Q |
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||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3826336 |
ctaatgtaagagacagttcgattgtctcttagacatggcttctgctgatattaaagtacgtggtttaccaaatgctgcaaaacatgtttcatatgttact |
3826435 |
T |
|
| Q |
318 |
tagagaactacatcagtttgataaacaacatgcacataaaataaataagatactttagttttggttgattacttgtatagcaagtaactcacatatgtag |
417 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3826436 |
tagagaactacatcagtttgataaacgacatgcacataaaataaataagatactttagttttggttgattacttgtatagcaagtaactcacatatgtag |
3826535 |
T |
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| Q |
418 |
tagtatataaacatgtaacgtcacagttttcattgcgaatgagaatacatagt |
470 |
Q |
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| T |
3826536 |
tagtatataaacatgcaacgtcacaattttcattgcgaatgagaatacatagt |
3826588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 33 - 154
Target Start/End: Original strand, 3828346 - 3828462
Alignment:
| Q |
33 |
atgagagctgttttattcagaatgaggatggattgtcttagtggattattcatttggaatgtgcttaaactgtccaaattaaaccagtcgatatttcgtc |
132 |
Q |
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|||||||||||| ||| |||||| |||||||||||||||||| |||| |||||||||||||| || |||||||| ||||||||||||||||| || |
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| T |
3828346 |
atgagagctgttccattgagaatgtggatggattgtcttagtgaattaatcatttggaatgtggttgaactgtcc-----aaaccagtcgatatttcatc |
3828440 |
T |
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| Q |
133 |
catgaaaagcgctctcgctggt |
154 |
Q |
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|||||||| |||||| |||||| |
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| T |
3828441 |
catgaaaaccgctctagctggt |
3828462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 263 - 324
Target Start/End: Original strand, 3825735 - 3825796
Alignment:
| Q |
263 |
tgatattaaagtacgtggtttaccaaatgctgcaaaaaatgtttcatatgttacttagagaa |
324 |
Q |
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||||||||| || ||||||||||||||||||||| |||||||||||||| | ||||||||| |
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| T |
3825735 |
tgatattaatgtctgtggtttaccaaatgctgcaacaaatgtttcatatggtgcttagagaa |
3825796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 9e-31; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 49770351 - 49770220
Alignment:
| Q |
18 |
ggctgtagaagagagatgagagctgttttattcagaatgaggatggattgtcttagtggattattcatttggaatgtgcttaaactgtccaaattaaacc |
117 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||| |||||||||| ||||||| |||| ||||||| ||||| || |||||||| ||||| |
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| T |
49770351 |
ggctgtagaagagagataagagctgttccattcagaatgtggatggattgccttagtgaattaatcatttgaaatgttgttgaactgtcc-----aaacc |
49770257 |
T |
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| Q |
118 |
agtcgatatttcgtccatgaaaagcgctctcgctggt |
154 |
Q |
| |
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|||||||||||||||||||||||||||||| |||||| |
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| T |
49770256 |
agtcgatatttcgtccatgaaaagcgctcttgctggt |
49770220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 154 - 239
Target Start/End: Complemental strand, 49772271 - 49772187
Alignment:
| Q |
154 |
taacatgtgaagcaaaataggaagaagttttgtacgctaacttataactcacctgaagaacattctaatgtaagagacagttcaat |
239 |
Q |
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|||||||||||| ||||||||||||||||| ||| ||||| || |||||||||||| |||||||| ||| || | ||||||||||| |
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| T |
49772271 |
taacatgtgaagtaaaataggaagaagtttagtaagctaa-ttgtaactcacctgacgaacattccaatttaggcgacagttcaat |
49772187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 255 - 327
Target Start/End: Complemental strand, 49772143 - 49772070
Alignment:
| Q |
255 |
gcttctgctgatattaaagtacgtggtttaccaaatgctgcaa-aaaatgtttcatatgttacttagagaacta |
327 |
Q |
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|||||| |||||||||||| | ||||||||||||||||||| |||||||||||| |||||| ||||||||| |
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| T |
49772143 |
gcttcttctgatattaaagcctgcggtttaccaaatgctgcaataaaatgtttcatttgttaccaagagaacta |
49772070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 372 - 491
Target Start/End: Complemental strand, 11753053 - 11752934
Alignment:
| Q |
372 |
ttagttttggttgattacttgtatagcaagtaactcacatatgtagtagtatataaacatgtaacgtcacagttttcattgcgaatgagaatacatagtt |
471 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||| | |||||| ||| |||||| ||||| |||||||||| ||||| ||| ||||||| |
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| T |
11753053 |
ttagttttggttgattccttgtatagcaattaactcacatatgattttgtatatgaacttgtaacatcacaattttcattgctaatgaaaattcatagtt |
11752954 |
T |
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| Q |
472 |
acactcacataggactctct |
491 |
Q |
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||| |||||||| ||||||| |
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| T |
11752953 |
acaatcacatagaactctct |
11752934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 378 - 462
Target Start/End: Complemental strand, 11755869 - 11755785
Alignment:
| Q |
378 |
ttggttgattacttgtatagcaagtaactcacatatgtagtagtatataaacatgtaacgtcacagttttcattgcgaatgagaa |
462 |
Q |
| |
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|||||| |||| ||||||||||| ||||||||||||| || |||||||||| |||||| ||||| |||||||||| ||| |||| |
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| T |
11755869 |
ttggtttattaattgtatagcaactaactcacatatgatgttgtatataaacttgtaacctcacaattttcattgctaataagaa |
11755785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 415
Target Start/End: Complemental strand, 16943663 - 16943621
Alignment:
| Q |
373 |
tagttttggttgattacttgtatagcaagtaactcacatatgt |
415 |
Q |
| |
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||||||| |||||||||||||||| |||||||||| ||||||| |
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|
| T |
16943663 |
tagttttcgttgattacttgtataacaagtaactcccatatgt |
16943621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 415
Target Start/End: Complemental strand, 17014328 - 17014286
Alignment:
| Q |
373 |
tagttttggttgattacttgtatagcaagtaactcacatatgt |
415 |
Q |
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||||||| |||||||||||||||| |||||||||| ||||||| |
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| T |
17014328 |
tagttttcgttgattacttgtataacaagtaactcccatatgt |
17014286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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