View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11875_low_3 (Length: 290)
Name: NF11875_low_3
Description: NF11875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11875_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 7 - 195
Target Start/End: Complemental strand, 38941856 - 38941668
Alignment:
| Q |
7 |
cttttaaccgtgtaaagtcttacttagtttaaagcttcatttatttttaaagagggttttaaggagaagaagaaactaactaatatagaagatgaggtta |
106 |
Q |
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| T |
38941856 |
cttttaaccgtgtaaagtcttgcttggtttaaagcttcatttatttttaaagagggttttaaagagaagaagaaactaactaatatagaagatgaggtta |
38941757 |
T |
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| Q |
107 |
aatttgacacaagtttaaagattgatgagacatttacgtgtagtagctgcaatcaagaaacgtctacggagaagcaccttatgcttgat |
195 |
Q |
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| T |
38941756 |
aatttgacacaagtttaaagattgatgagacatttacgtgtaatagctgaaatcaaaaaacatctatggagaagcaccttatgcttgat |
38941668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 202 - 274
Target Start/End: Complemental strand, 38941609 - 38941537
Alignment:
| Q |
202 |
tcaaataaatttacaatcatgttagtttctctaaggatttggatttggattcatttattgtgtaacacctact |
274 |
Q |
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| T |
38941609 |
tcaaataaatttacagtcatgttagtttctcttaggatttggattttgactcattatttatgtaacacctact |
38941537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 7 - 195
Target Start/End: Complemental strand, 52019650 - 52019462
Alignment:
| Q |
7 |
cttttaaccgtgtaaagtcttacttagtttaaagcttcatttatttttaaagagggttttaaggagaagaagaaactaactaatatagaagatgaggtta |
106 |
Q |
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| T |
52019650 |
cttttaaccgtgtaaagtcttgcttggtttaaagcttcatttatttttaaagagggttttaaagagaagaagaaactaactaatatagaagatgaggtta |
52019551 |
T |
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| Q |
107 |
aatttgacacaagtttaaagattgatgagacatttacgtgtagtagctgcaatcaagaaacgtctacggagaagcaccttatgcttgat |
195 |
Q |
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| T |
52019550 |
aatttgacacaagtttaaagattgatgagacatttacgtgtaatagctgtaatcaataaacatctatggagaagcaccttatgcttgat |
52019462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 202 - 274
Target Start/End: Complemental strand, 52019403 - 52019331
Alignment:
| Q |
202 |
tcaaataaatttacaatcatgttagtttctctaaggatttggatttggattcatttattgtgtaacacctact |
274 |
Q |
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||||||||||||||| |||||||||||||||| ||||||||||||| || |||||| || ||||||||||||| |
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| T |
52019403 |
tcaaataaatttacagtcatgttagtttctcttaggatttggattttgactcattttttatgtaacacctact |
52019331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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