View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11876_high_10 (Length: 250)
Name: NF11876_high_10
Description: NF11876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11876_high_10 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 12924738 - 12924980
Alignment:
| Q |
8 |
cagagagattaacaataatttcaatctgttgaaacctcaactgttaaacttaatcacttaattatatctggaaattcaaatgttacgaaatgcctaataa |
107 |
Q |
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| T |
12924738 |
cagagagattaacaataattccaatctgttgaaacctcaactgttaaacttaatcacttaattatatctggaaattcaaatggtaggaaatgcctaataa |
12924837 |
T |
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| Q |
108 |
ttccaagtgcttggaagttgcaaacacaattgcattaaaaaatcgcacacatatcatgatatatcaacagatctaaaactaattacagttcctgatgcat |
207 |
Q |
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| T |
12924838 |
ttccaagtgcttgcaagttgcaaacacaattgcattggaaaatcacacacatatcatgatatatcaacagatctaaaactaattacacttcctgatgcat |
12924937 |
T |
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| Q |
208 |
aattagtagatgacagaaaattagctttcacatttaaaatttc |
250 |
Q |
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| T |
12924938 |
aattagtagatgacagaaaattagctttcacatttaaaatttc |
12924980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 12924994 - 12925056
Alignment:
| Q |
68 |
attatatctggaaattcaaatgttacgaaatgcctaataattccaagtgcttggaagttgcaa |
130 |
Q |
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| T |
12924994 |
attatttcttgaaattcaaatggtacaaaatgtcttataattccaagtgattggaagctgcaa |
12925056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 76 - 209
Target Start/End: Original strand, 22382897 - 22383030
Alignment:
| Q |
76 |
tggaaattcaaatgttacgaaatgcctaataattccaagtgcttggaagttgcaaacacaattgcattaaaaaatcgcacacatatcatgatatatcaac |
175 |
Q |
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| T |
22382897 |
tggaaattcaaacggtacaaaatgcctaataattccaagtgcttggaagttgcaaacacaattgcattgaaaaatcacacacatatcatgatatatcaac |
22382996 |
T |
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| Q |
176 |
agatctaaaactaattacagttcctgatgcataa |
209 |
Q |
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| T |
22382997 |
agatcaaaaactaattacagttcctgatgtataa |
22383030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 64 - 190
Target Start/End: Complemental strand, 30790213 - 30790087
Alignment:
| Q |
64 |
cttaattatatctggaaattcaaatgttacgaaatgcctaataattccaagtgcttggaagttgcaaacacaattgcattaaaaaatcgcacacatatca |
163 |
Q |
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| T |
30790213 |
cttaattatttctggaaattcaaatcgcacgaaatgcctaataattccaagtgcttggaagttgcagacacaattgcattgaaaaatcacgcacatatca |
30790114 |
T |
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| Q |
164 |
tgatatatcaacagatctaaaactaat |
190 |
Q |
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| T |
30790113 |
tgatatatcaatagatcaaaacctaat |
30790087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 30789952 - 30789903
Alignment:
| Q |
166 |
atatatcaacagatctaaaactaattacagttcctgatgcataattagta |
215 |
Q |
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| T |
30789952 |
atatatcaacatatctaaaactaatcatcgtttctgatgcataattagta |
30789903 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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