View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11876_high_2 (Length: 414)
Name: NF11876_high_2
Description: NF11876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11876_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 18 - 378
Target Start/End: Original strand, 14757921 - 14758281
Alignment:
| Q |
18 |
actagcacaaacatactggcttgcacaggtgcttaggagggctaatatgttggcatcaaagctagctctgaggatcgactcgtccccgccaccggtacaa |
117 |
Q |
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| T |
14757921 |
actagcacaaacatactggcttgcacaggtgcttgggaggactaatatgttggcatcaaagctagctctgaccatcgatgcgtccccgccgccggtgcaa |
14758020 |
T |
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| Q |
118 |
agatttatgatatgtgatgctacatttagggattgggggaatcttgcaacaagtcaggaagttaataacagctttcaaaagaagattgagttgattttac |
217 |
Q |
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| T |
14758021 |
agatttttggtatttgaggctacatttagtgattgggggaagcttgcaacaggtaaggaagttaattatttctataaagagaggattgagttgattctag |
14758120 |
T |
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| Q |
218 |
agggtgttggattagtaagagagtgtccaccagcttattcggagctatataaattgtatggtctagatgnnnnnnntgatctaaggaaggaaataactga |
317 |
Q |
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| T |
14758121 |
aaggtgttgatttagtaagaaagtgtcctcctgcttattcggagctgtataaattgtatggtctagatgaaaaaaatgatctaaggaaggaaataactga |
14758220 |
T |
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| Q |
318 |
agctgtatggttactgatgccagcagtattcggttatgctaaatcaaaacatggtgataaa |
378 |
Q |
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| T |
14758221 |
agctttatggacaatgatgccactagtattcggttatgctaggtcaaaacatggtgataaa |
14758281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 20 - 269
Target Start/End: Original strand, 3614100 - 3614349
Alignment:
| Q |
20 |
tagcacaaacatactggcttgcacaggtgcttaggagggctaatatgttggcatcaaagctagctctgaggatcgactcgtccccgccaccggtacaaag |
119 |
Q |
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| T |
3614100 |
tagcacaaacatactggcttgcacaggtgcttgggaggactaatatgttggcatcaaagctagctctgagggttgatgcatcgccgccaccggtgcaaag |
3614199 |
T |
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| Q |
120 |
atttatgatatgtgatgctacatttagggattgggggaatcttgcaacaagtcaggaagttaataacagctttcaaaagaagattgagttgattttacag |
219 |
Q |
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||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||| | || |||||||| ||||||||||||| || || |
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| T |
3614200 |
atttatgatatgtgatgctacatttagtgattgggggaagcttgcaacaggtcaggaagttaatagtatctatcaaaagaggattgagttgattatagag |
3614299 |
T |
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| Q |
220 |
ggtgttggattagtaagagagtgtccaccagcttattcggagctatataa |
269 |
Q |
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| T |
3614300 |
ggtgttgaattagtaagaaagtgtcctcctgcttattcagagctgtataa |
3614349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 310 - 392
Target Start/End: Original strand, 3614346 - 3614428
Alignment:
| Q |
310 |
ataactgaagctgtatggttactgatgccagcagtattcggttatgctaaatcaaaacatggtgataaacgtgtagctatggc |
392 |
Q |
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| T |
3614346 |
ataagtgaagctgtagggacattgatgccagcagtgttcggttatgctaagtcaaaacatggtgataaacgtatagctatggc |
3614428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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