View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11876_high_6 (Length: 311)
Name: NF11876_high_6
Description: NF11876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11876_high_6 |
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| [»] scaffold0376 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 295
Target Start/End: Original strand, 29729472 - 29729756
Alignment:
| Q |
12 |
acagatgtcgaaaaaattgttcatggaacccaaggttgttcccacatagttgaataagtttatttcttttactatgaaactattttgaagttgttatcaa |
111 |
Q |
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| T |
29729472 |
acagatgtcgaaaaaattgttcatggaacccaaggttgttcccacatagttgaataagtttatttcttttactatgaaactattttgaa---gttatcaa |
29729568 |
T |
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| Q |
112 |
gttcaaatgaaaaagggatttgagggtatgatcttagtcgataca----nnnnnnnnnnagtttaattactgattcagtaataattctatctacaaatat |
207 |
Q |
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| T |
29729569 |
gttcaaatgaaaaagggatttgagggtatgatcttagtcgatgcatttttattttttttagtttaattactgattcagtaataattctatctacaaatat |
29729668 |
T |
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| Q |
208 |
gaatgctatatttggacttatttatattatattccatttttatactggtcctgttaatgttggtaaccaagaaatactggtcctatat |
295 |
Q |
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| T |
29729669 |
gaatgctatatttggacttatttatattatattccatttttatactggtcctgttaatgttggtaaccaagaagtactgatcctatat |
29729756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 111 - 279
Target Start/End: Original strand, 16850095 - 16850261
Alignment:
| Q |
111 |
agttcaaatgaaaaagggatttgagggtatgatcttagtcgatacannnnnnnnnnagtttaattactgattcagtaataattctatctacaaatatgaa |
210 |
Q |
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| T |
16850095 |
agttcaaatgaaaaagggatt-gagggtatgatcttagttgatacatttttttt--agtttaattactgattcagtaataattctatctacaaacatgaa |
16850191 |
T |
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| Q |
211 |
t-gcta-tatttggacttatttatattatattccatttttatactggtcctgttaatgttggtaaccaaga |
279 |
Q |
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| T |
16850192 |
tagttactattt-gacttatttatattatattccatttttatactggtcctgttaatgttggtaactaaga |
16850261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0376 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 44 - 100
Target Start/End: Original strand, 4139 - 4195
Alignment:
| Q |
44 |
aggttgttcccacatagttgaataagtttatttcttttactatgaaactattttgaa |
100 |
Q |
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| T |
4139 |
aggttgttcccacatagttgagtaagtttatttttgttactatgaaaccaatttgaa |
4195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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